sync_array_print_long_waits(): Return the longest waiting thread ID
and the longest waited-for lock. Only if those remain unchanged
between calls in srv_error_monitor_thread(), increment
fatal_cnt. Otherwise, reset fatal_cnt.
Background: There is a built-in watchdog in InnoDB whose purpose is to
kill the server when some thread is stuck waiting for a mutex or
rw-lock. Before this fix, the logic was flawed.
The function sync_array_print_long_waits() returns TRUE if it finds a
lock wait that exceeds 10 minutes (srv_fatal_semaphore_wait_threshold).
The function srv_error_monitor_thread() will kill the server if this
happens 10 times in a row (fatal_cnt reaches 10), checked every 30
seconds. This is wrong, because this situation does not mean that the
server is hung. If the server is very busy for a little over 15
minutes, it will be killed.
Consider this example. Thread T1 is waiting for mutex M. Some time
later, threads T2..Tn start waiting for the same mutex M. If T1 keeps
waiting for 600 seconds, fatal_cnt will be incremented to 1. So far,
so good. Now, if M is granted to T1, the server was obviously not
stuck. But, T2..Tn keeps waiting, and their wait time will be longer
than 600 seconds. If 5 minutes later, some Tn has still been waiting
for more than 10 minutes for the mutex M, the server can be killed,
even though it is not stuck.
rb:622 approved by Jimmy Yang
The LGPL license is used in some legacy code, and to
adhere to current licensing polity, we remove those
files that are no longer used, and reorganize the
remaining LGPL code so it will be GPL licensed from
now on.
Note: This patch only removed LGPL licensed files
in MySQL 5.5 and later, and is the third of a
set of patches to remove LGPL from all trees.
(See Bug# 11840513 for details)
This problem was introduced in
marko.makela@oracle.com-20100514130815-ym7j7cfu88ro6km4
and is probably the reason for the following valgrind warning:
from http://bugs.mysql.com/52691 , http://bugs.mysql.com/file.php?id=16880 :
Version: '5.6.3-m5-valgrind-max-debug' socket: '/tmp/mysql.sock' port: 3306 Source distribution
==14947== Thread 18:
==14947== Conditional jump or move depends on uninitialised value(s)
==14947== at 0x4A06318: __GI_strlen (mc_replace_strmem.c:284)
==14947== by 0x9F3D7A: fill_innodb_trx_from_cache(trx_i_s_cache_struct*, THD*, TABLE*) (i_s.cc:591)
==14947== by 0x9F4D7D: trx_i_s_common_fill_table(THD*, TABLE_LIST*, Item*) (i_s.cc:1238)
==14947== by 0x7689F3: get_schema_tables_result(JOIN*, enum_schema_table_state) (sql_show.cc:6745)
==14947== by 0x715A75: JOIN::exec() (sql_select.cc:2861)
==14947== by 0x7185BD: mysql_select(THD*, Item***, TABLE_LIST*, unsigned int, List<Item>&, Item*, unsigned int, st_order*, st_order*, Item*, st_order*, unsigned long long, select_result*, st_select_lex_unit*, st_select_lex*) (sql_select.cc:3609)
==14947== by 0x70E823: handle_select(THD*, LEX*, select_result*, unsigned long) (sql_select.cc:319)
==14947== by 0x6F2305: execute_sqlcom_select(THD*, TABLE_LIST*) (sql_parse.cc:4557)
==14947== by 0x6EAED4: mysql_execute_command(THD*) (sql_parse.cc:2135)
==14947== by 0x6F44C9: mysql_parse(THD*, char*, unsigned int, Parser_state*) (sql_parse.cc:5597)
==14947== by 0x6E864B: dispatch_command(enum_server_command, THD*, char*, unsigned int) (sql_parse.cc:1093)
==14947== by 0x6E785E: do_command(THD*) (sql_parse.cc:815)
==14947== by 0x6C18DD: do_handle_one_connection(THD*) (sql_connect.cc:771)
==14947== by 0x6C146E: handle_one_connection (sql_connect.cc:707)
==14947== by 0x30E1807760: start_thread (pthread_create.c:301)
==14947== by 0x35EA670F: ???
==14947== Uninitialised value was created by a heap allocation
==14947== at 0x4A0515D: malloc (vg_replace_malloc.c:195)
==14947== by 0xB4B948: mem_area_alloc (mem0pool.c:385)
==14947== by 0xB4A27C: mem_heap_create_block (mem0mem.c:333)
==14947== by 0xB4A530: mem_heap_add_block (mem0mem.c:446)
==14947== by 0xB0D2A4: mem_heap_alloc (mem0mem.ic:186)
==14947== by 0xB0D9C2: ha_storage_put_memlim (ha0storage.c:118)
==14947== by 0xA479D8: fill_trx_row (trx0i_s.c:521)
==14947== by 0xA490E9: fetch_data_into_cache (trx0i_s.c:1319)
==14947== by 0xA491BA: trx_i_s_possibly_fetch_data_into_cache (trx0i_s.c:1352)
==14947== by 0x9F4CE7: trx_i_s_common_fill_table(THD*, TABLE_LIST*, Item*) (i_s.cc:1221)
==14947== by 0x7689F3: get_schema_tables_result(JOIN*, enum_schema_table_state) (sql_show.cc:6745)
==14947== by 0x715A75: JOIN::exec() (sql_select.cc:2861)
==14947== by 0x7185BD: mysql_select(THD*, Item***, TABLE_LIST*, unsigned int, List<Item>&, Item*, unsigned int, st_order*, st_order*, Item*, st_order*, unsigned long long, select_result*, st_select_lex_unit*, st_select_lex*) (sql_select.cc:3609)
==14947== by 0x70E823: handle_select(THD*, LEX*, select_result*, unsigned long) (sql_select.cc:319)
==14947== by 0x6F2305: execute_sqlcom_select(THD*, TABLE_LIST*) (sql_parse.cc:4557)
==14947== by 0x6EAED4: mysql_execute_command(THD*) (sql_parse.cc:2135)
==14947== by 0x6F44C9: mysql_parse(THD*, char*, unsigned int, Parser_state*) (sql_parse.cc:5597)
==14947== by 0x6E864B: dispatch_command(enum_server_command, THD*, char*, unsigned int) (sql_parse.cc:1093)
==14947== by 0x6E785E: do_command(THD*) (sql_parse.cc:815)
==14947== by 0x6C18DD: do_handle_one_connection(THD*) (sql_connect.cc:771)
==14947== by 0x6C146E: handle_one_connection (sql_connect.cc:707)
==14947== by 0x30E1807760: start_thread (pthread_create.c:301)
==14947== by 0x35EA670F: ???
(gdb) bt
#0 0x0000000004a06318 in _vgrZU_libcZdsoZa___GI_strlen (str=0x3026bfa0 "insert into `blobtest` set `data`='pkefxxpkalpabzgrczlxefkreqljeqbvzrcnhvhsjsfnvxzjsltfuincffigdkmhvvcmnseluzgbtedrfmxvnrdmzesbinjgwvharkpgjplrlnqudfidbqwgbykupycxzyikzqincnsjrxgncqzlgyqwjdbjulztgsffxpjgymsnntdibvklwqylmwhsmdskmllxuwafabdjnwlyofknwuixiyrgnplmerfdewgizkdhznitesfqepsqbbwkdepkmjoseyxjofmmjaqdipwopfrwidmhqbtovdslvayxcnpewzhppeetblccppniamezibuoinvlxkafpcmozawtplfpepxwlwhymsuraezcwvjqzwogsozodlsfzjiyrcaljjhqwdrcjawvelhefzzaexvcbyorlcyupqwgjuamiqpiputtndjwcsuyzdfhuxswuowhrzdvriwrxqmcqthvzzzvivbabbnhdbtcfdtgssvmirrcddnytnctcvqplwytxxzxelldhwahalzxvgynaiwjyezhxqhlsqudngekocfvlbqprxqhyhwbaomgqiwkpfguohuvlnhtrsszgacxhhzeppyqwfwabiqzgyzkperiidyunrykopysvlcxwhrcboetjltawdjergalsfvaxncmzoznryumrjmncvhvxqvqhhbznnifkguuiffmlrbmgwtzvnuwlaguixqadkupfhasbbxnwkrvsfhrqanfmvjtzfqodtutkjlxfcogtsjywrdgmzgszjtsmimaelsveayqrwviqwwefeziuaqsqpauxpnzhaxjtkdfvvodniwezskbxfxszyniyzkzxngcfwgjlyrlskmrzxqnptwlilsxybuguafxxkvryyjrnkhhcmxuusitaflaiuxjhyfnzkahlgmaszujqmfdhyppdnpweqanmvzgjfyzjolbmprhnuuxextcaxzicfvsuochprmlf"...) at mc_replace_strmem.c:284
#1 0x00000000009f3d7b in fill_innodb_trx_from_cache (cache=0x1462440, thd=0x2a495000, table=0x2a422500) at /home/sbester/build/bzr/mysql-trunk/storage/innobase/handler/i_s.cc:591
#2 0x00000000009f4d7e in trx_i_s_common_fill_table (thd=0x2a495000, tables=0x2a4c3ec0) at /home/sbester/build/bzr/mysql-trunk/storage/innobase/handler/i_s.cc:1238
#3 0x00000000007689f4 in get_schema_tables_result (join=0x30f90c40, executed_place=PROCESSED_BY_JOIN_EXEC) at /home/sbester/build/bzr/mysql-trunk/sql/sql_show.cc:6745
#4 0x0000000000715a76 in JOIN::exec (this=0x30f90c40) at /home/sbester/build/bzr/mysql-trunk/sql/sql_select.cc:2861
#5 0x00000000007185be in mysql_select (thd=0x2a495000, rref_pointer_array=0x2a497590, tables=0x2a4c3ec0, wild_num=1, fields=..., conds=0x0, og_num=0, order=0x0, group=0x0, having=0x0, proc_param=0x0, select_options=2684619520, result=0x30319720, unit=0x2a496d28, select_lex=0x2a497378) at /home/sbester/build/bzr/mysql-trunk/sql/sql_select.cc:3609
#6 0x000000000070e824 in handle_select (thd=0x2a495000, lex=0x2a496c78, result=0x30319720, setup_tables_done_option=0) at /home/sbester/build/bzr/mysql-trunk/sql/sql_select.cc:319
#7 0x00000000006f2306 in execute_sqlcom_select (thd=0x2a495000, all_tables=0x2a4c3ec0) at /home/sbester/build/bzr/mysql-trunk/sql/sql_parse.cc:4557
#8 0x00000000006eaed5 in mysql_execute_command (thd=0x2a495000) at /home/sbester/build/bzr/mysql-trunk/sql/sql_parse.cc:2135
#9 0x00000000006f44ca in mysql_parse (thd=0x2a495000, rawbuf=0x30d80060 "select * from innodb_trx", length=24, parser_state=0x35ea5540) at /home/sbester/build/bzr/mysql-trunk/sql/sql_parse.cc:5597
#10 0x00000000006e864c in dispatch_command (command=COM_QUERY, thd=0x2a495000, packet=0x30bb4e31 "select * from innodb_trx", packet_length=24) at /home/sbester/build/bzr/mysql-trunk/sql/sql_parse.cc:1093
#11 0x00000000006e785f in do_command (thd=0x2a495000) at /home/sbester/build/bzr/mysql-trunk/sql/sql_parse.cc:815
#12 0x00000000006c18de in do_handle_one_connection (thd_arg=0x2a495000) at /home/sbester/build/bzr/mysql-trunk/sql/sql_connect.cc:771
#13 0x00000000006c146f in handle_one_connection (arg=0x2a495000) at /home/sbester/build/bzr/mysql-trunk/sql/sql_connect.cc:707
#14 0x00000030e1807761 in start_thread (arg=0x35ea6710) at pthread_create.c:301
#15 0x00000030e14e14ed in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:115
(gdb) frame 1
#1 0x00000000009f3d7b in fill_innodb_trx_from_cache (cache=0x1462440, thd=0x2a495000, table=0x2a422500) at /home/sbester/build/bzr/mysql-trunk/storage/innobase/handler/i_s.cc:591
591 row->trx_query_cs);
(gdb) list
586 if (row->trx_query) {
587 /* store will do appropriate character set
588 conversion check */
589 fields[IDX_TRX_QUERY]->store(
590 row->trx_query, strlen(row->trx_query),
591 row->trx_query_cs);
592 fields[IDX_TRX_QUERY]->set_notnull();
593 } else {
594 fields[IDX_TRX_QUERY]->set_null();
595 }
ibuf_inside(), ibuf_enter(), ibuf_exit(): Add the parameter mtr. The
flag is no longer kept in the thread-local storage but in the
mini-transaction (mtr->inside_ibuf).
mtr_start(): Clean up the comment and remove the unused return value.
mtr_commit(): Assert !ibuf_inside(mtr) in debug builds.
ibuf_mtr_start(): Like mtr_start(), but sets the flag.
ibuf_mtr_commit(), ibuf_btr_pcur_commit_specify_mtr(): Wrappers that
assert ibuf_inside().
buf_page_get_zip(), buf_page_init_for_read(),
buf_read_ibuf_merge_pages(), fil_io(), ibuf_free_excess_pages(),
ibuf_contract_ext(): Remove assertions on ibuf_inside(), because a
mini-transaction is not available.
buf_read_ahead_linear(): Add the parameter inside_ibuf.
ibuf_restore_pos(): When this function returns FALSE, it commits mtr
and must therefore do ibuf_exit(mtr).
ibuf_delete_rec(): This function commits mtr and must therefore do
ibuf_exit(mtr).
ibuf_rec_get_page_no(), ibuf_rec_get_space(), ibuf_rec_get_info(),
ibuf_rec_get_op_type(), ibuf_build_entry_from_ibuf_rec(),
ibuf_rec_get_volume(), ibuf_get_merge_page_nos(),
ibuf_get_volume_buffered_count(), ibuf_get_entry_counter_low(): Add
the parameter mtr in debug builds, for asserting ibuf_inside(mtr).
rb:585 approved by Sunny Bains
Remove the slot_no member of struct thr_local_struct.
enum srv_thread_type: Remove unused thread types.
srv_get_thread_type(): Unused function, remove.
thr_local_get_slot_no(), thr_local_set_slot_no(): Remove.
srv_thread_type_validate(), srv_slot_get_type(): New functions, for debugging.
srv_table_reserve_slot(): Return the srv_slot_t* directly. Do not create
thread-local storage.
srv_suspend_thread(): Get the srv_slot_t* as parameter. Return void;
the caller knows slot->event already.
srv_thread_has_reserved_slot(), srv_release_threads(): Assert
srv_thread_type_validate(type).
srv_init(): Use mem_zalloc() instead of mem_alloc(). Replace
srv_table_get_nth_slot(), because it now asserts that the kernel_mutex
is being held.
srv_master_thread(), srv_purge_thread(): Remember the slot from
srv_table_reserve_slot().
rb:629 approved by Inaam Rana
According to the zlib documentation, next_in and avail_in
must be initialized before invoking inflateInit or inflateInit2.
Furthermore, the zalloc function must clear the allocated memory.
btr_copy_zblob_prefix(): Replace the d_stream parameter with buf,len
and return the copied length.
page_zip_decompress(): Invoke inflateInit2 a little later.
page_zip_zalloc(): Rename from page_zip_alloc().
Invoke mem_heap_zalloc() instead of mem_heap_alloc().
rb:619 approved by Jimmy Yang
KEY NO 0 FOR TABLE IN ERROR LOG
With the changes made by the patches for Bug#11751388 and
Bug#11784056, concurrent reads are allowed while secondary
indexes are created in InnoDB. This means that the metadata
lock on the affected table is not upgraded to exclusive
until the .FRM is updated at the end of ALTER TABLE processing.
The problem was that if this lock upgrade failed for some
reason (e.g. timeout), the index information in the server
and inside InnoDB would be out of sync. This would happen
since the add index operation already was committed inside
InnoDB but the table metadata inside the server had not been
updated yet.
This patch fixes the problem by (for now) reverting the
effects of the patches for Bug#11751388 and Bug#11784056.
Concurrent reads will now again be blocked during creation
of secondary indexes in InnoDB.
Test case added to innodb_mysql_lock.test.
Before this fix, two performance schema unit tests crashed on windows.
The problem was a missing initialization to PFS_atomics,
which caused the crash only for platform not compiled with native atomics.
This fix adds the missing initialization in the unit tests.
No production code was changed, this is a unit test bug only.
MAP 'REPAIR TABLE' TO RECREATE +ANALYZE FOR ENGINES NOT
SUPPORTING NATIVE REPAIR
Executing 'mysqlcheck --check-upgrade --auto-repair ...' will first issue
'CHECK TABLE FOR UPGRADE' for all tables in the database in order to check if the
tables are compatible with the current version of MySQL. Any tables that are
found incompatible are then upgraded using 'REPAIR TABLE'.
The problem was that some engines (e.g. InnoDB) do not support 'REPAIR TABLE'.
This caused any such tables to be left incompatible. As a result such tables were
not properly fixed by the mysql_upgrade tool.
This patch fixes the problem by first changing 'CHECK TABLE FOR UPGRADE' to return
a different error message if the engine does not support REPAIR. Instead of
"Table upgrade required. Please do "REPAIR TABLE ..." it will report
"Table rebuild required. Please do "ALTER TABLE ... FORCE ..."
Second, the patch changes mysqlcheck to do 'ALTER TABLE ... FORCE' instead of
'REPAIR TABLE' in these cases.
This patch also fixes 'ALTER TABLE ... FORCE' to actually rebuild the table.
This change should be reflected in the documentation. Before this patch,
'ALTER TABLE ... FORCE' was unused (See Bug#11746162)
Test case added to mysqlcheck.test
Setting lowercase_table_names to 2 on Windows causing Foreign Key problems
This problem was exposed by the fix for Bug#55222. There was a codepath in dict0load.c,
dict_load_foreigns() that made sure the table name matched case sensitive in order to
load a referenced table into the dictionary as needed. If an engine is rebooted which
accesses a table with foreign keys, and lower_case_table_names=2, then the table with
foreign keys will get an error when it is changed (insert/updated/delete).
Once the referenced tables are loaded into the dictionary cache by a select statement
on those tables, the same change would succeed because the affected code path would
not get followed.
NON-PRIMARY UNIQUE INDEX USING INNODB
This patch adds the HA_INPLACE_ADD_UNIQUE_INDEX_NO_WRITE
capability flag to InnoDB, indicating that concurrent reads
can be allowed while non-primary unique indexes are created.
This is an follow-up to Bug #11751388 which enabled concurrent
reads when creating non-primary non-unique indexes.
Test case added to innodb_mysql_sync.test.
and compressed tables
buf_LRU_drop_page_hash_for_tablespace(): after releasing and
reacquiring the buffer pool mutex, do not dereference any block
descriptor pointer that is not known to be a pointer to an
uncompressed page frame (type buf_block_t; state ==
BUF_BLOCK_FILE_PAGE). Also, defer the acquisition of the block_mutex
until it is needed.
buf_page_get_gen(): Add mode == BUF_GET_IF_IN_POOL_PEEK for
buffer-fixing a block without making it young in the LRU list.
buf_page_get_gen(), buf_page_init(), buf_LRU_block_remove_hashed_page():
Set bpage->state = BUF_BLOCK_ZIP_FREE before buf_buddy_free(bpage),
so that similar race conditions might be detected a little easier.
btr_search_drop_page_hash_when_freed(): Use BUF_GET_IF_IN_POOL_PEEK
when dropping the hash indexes.
rb://528 approved by Jimmy Yang
IN OVERFLOW
Do not assign the result of the difference to a signed variable and
checking whether it is negative afterwards because this limits the max diff
to 2G on 32 bit systems. E.g. "signed = 3.5G - 1G" would be negative and the
code would assume that 3.5G < 1G. Instead compare the two variables directly
and assign to unsigned only if we know that the result of the subtraction
will be positive.
Discussed with: Jimmy and Sunny (via IRC)
Bug #11766501: Multiple RBS break the get rseg with mininum trx_t::no code during purge
Bug# 59291 changes:
Main problem is that truncating the UNDO log at the completion of every
trx_purge() call is expensive as the number of rollback segments is increased.
We truncate after a configurable amount of pages. The innodb_purge_batch_size
parameter is used to control when InnoDB does the actual truncate. The truncate
is done once after 128 (or TRX_SYS_N_RSEGS iterations). In other words we
truncate after purge 128 * innodb_purge_batch_size. The smaller the batch
size the quicker we truncate.
Introduce a new parameter that allows how many rollback segments to use for
storing REDO information. This is really step 1 in allowing complete control
to the user over rollback space management.
New parameters:
i) innodb_rollback_segments = number of rollback_segments to use
(default is now 128) dynamic parameter, can be changed anytime.
Currently there is little benefit in changing it from the default.
Optimisations in the patch.
i. Change the O(n) behaviour of trx_rseg_get_on_id() to O(log n)
Backported from 5.6. Refactor some of the binary heap code.
Create a new include/ut0bh.ic file.
ii. Avoid truncating the rollback segments after every purge.
Related changes that were moved to a separate patch:
i. Purge should not do any flushing, only wait for space to be free so that
it only does purging of records unless it is held up by a long running
transaction that is preventing it from progressing.
ii. Give the purge thread preference over transactions when acquiring the
rseg->mutex during commit. This to avoid purge blocking unnecessarily
when getting the next rollback segment to purge.
Bug #11766501 changes:
Add the rseg to the min binary heap under the cover of the kernel mutex and
the binary heap mutex. This ensures the ordering of the min binary heap.
The two changes have to be committed together because they share the same
that fixes both issues.
rb://567 Approved by: Inaam Rana.
attempt to create spatial index on char > 31 bytes".
Attempt to create spatial index on char field with length
greater than 31 byte led to assertion failure on server
compiled with safemutex support.
The problem occurred in mi_create() function which was called
to create a new version of table being altered. This function
failed since it detected an attempt to create a spatial key
on non-binary column and tried to return an error.
On its error path it tried to unlock THR_LOCK_myisam mutex
which has not been not locked at this point. Indeed such an
incorrect behavior was caught by safemutex wrapper and caused
assertion failure.
This patch fixes the problem by ensuring that mi_create()
doesn't releases THR_LOCK_myisam mutex on error path if it was
not acquired.
rw_lock_create_func(): Initialize lock->writer_thread, so that Valgrind
will not complain even when Valgrind instrumentation is not enabled.
Flag lock->writer_thread uninitialized, so that Valgrind can complain
when it is used uninitialized.
rw_lock_set_writer_id_and_recursion_flag(): Revert the bogus Valgrind
instrumentation that was pushed in the first attempt to fix this bug.
"set optimizer_switch to e or d causes invalid memory writes/valgrind warnings":
due to prefix support, the argument "e" was overwritten with its full value
"engine_condition_pushdown", which caused a buffer overrun.
This was wrong usage of find_type(); other wrong usages are fixed here too.
Please start reading with the comment of typelib.c.
