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Bug#319 if while a non-transactional slave is replicating a transaction possible problem It is impossible to roll back a mixed engines transaction when one of the engine is non-transaction. In replication that fact is crucial because the slave can not safely re-apply a transction that was interrupted with STOP SLAVE. Fixed with making STOP SLAVE not be effective immediately in the case the current group of replication events has modified a non-transaction table. In order for slave to leave either the group needs finishing or the user issues KILL QUERY|CONNECTION slave_thread_id.
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--innodb_lock_wait_timeout=60
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