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InnoDB could return off-by-1 estimates for the involved tables.
This would cause off-by-many difference in join output cardinality
for the top-level SELECT, and so different query plan for the subquery.
The fix: Introduce mysql-test/include/innodb_stable_estimates.{inc,opt}
which disables InnoDB's background statistics collection, and use it.
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--innodb_stats_auto_recalc=0
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