Checking for kill with thd_kill_level() or check_killed() runs apc
requests, which takes the LOCK_thd_kill mutex. But this is dangerous,
as checking for kill needs to be called while holding many different
mutexes, and can lead to cyclic mutex dependency and deadlock.
But running apc is only "best effort", so skip running the apc if the
LOCK_thd_kill is not available. The apc will then be run on next check
of kill signal.
Signed-off-by: Kristian Nielsen <knielsen@knielsen-hq.org>
The MDEV-29693 conflict resolution is from Monty, as well as is
a bug fix where ANALYZE TABLE wrongly built histograms for
single-column PRIMARY KEY.
Also includes a fix for safe_malloc error reporting.
Other things:
- Copied main.log_slow from 10.4 to avoid mtr issue
Disabled test:
- spider/bugfix.mdev_27239 because we started to get
+Error 1429 Unable to connect to foreign data source: localhost
-Error 1158 Got an error reading communication packets
- main.delayed
- Bug#54332 Deadlock with two connections doing LOCK TABLE+INSERT DELAYED
This part is disabled for now as it fails randomly with different
warnings/errors (no corruption).
This allows a user to to change the default value of MAX_SEL_ARGS (16000)
in the rare case where they neeed more generated SEL_ARGS (as part of
the range optimizer)
Raise notes if indexes cannot be used:
- in case of data type or collation mismatch (diferent error messages).
- in case if a table field was replaced to something else
(e.g. Item_func_conv_charset) during a condition rewrite.
Added option to write warnings and notes to the slow query log for
slow queries.
New variables added/changed:
- note_verbosity, with is a set of the following options:
basic - All old notes
unusable_keys - Print warnings about keys that cannot be used
for select, delete or update.
explain - Print unusable_keys warnings for EXPLAIN querys.
The default is 'basic,explain'. This means that for old installations
the only notable new behavior is that one will get notes about
unusable keys when one does an EXPLAIN for a query. One can turn all
of all notes by either setting note_verbosity to "" or setting sql_notes=0.
- log_slow_verbosity has a new option 'warnings'. If this is set
then warnings and notes generated are printed in the slow query log
(up to log_slow_max_warnings times per statement).
- log_slow_max_warnings - Max number of warnings written to
slow query log.
Other things:
- One can now use =ALL for any 'set' variable to set all options at once.
For example using "note_verbosity=ALL" in a config file or
"SET @@note_verbosity=ALL' in SQL.
- mysqldump will in the future use @@note_verbosity=""' instead of
@sql_notes=0 to disable notes.
- Added "enum class Data_type_compatibility" and changing the return type
of all Field::can_optimize*() methods from "bool" to this new data type.
Reviewer & Co-author: Alexander Barkov <bar@mariadb.com>
- The code that prints out the notes comes mainly from Alexander
Example of what causes the problem:
T1: ANALYZE TABLE starts to collect statistics
T2: ALTER TABLE starts by deleting statistics for all changed fields,
then creates a temp table and copies data to it.
T1: ANALYZE ends and writes to the statistics tables.
T2: ALTER TABLE renames temp table in place of the old table.
Now the statistics from analyze matches the old deleted tables.
Fixed by waiting to delete old statistics until ALTER TABLE is
the only one using the old table and ensure that rename of columns
can handle swapping of column names.
rename_columns_in_stat_table() (former rename_column_in_stat_tables())
now takes a list of columns to rename. It uses the following algorithm
to update column_stats to be able to handle circular renames
- While there are columns to be renamed and it is the first loop or
last rename loop did change something.
- Loop over all columns to be renamed
- Change column name in column_stat
- If fail because of duplicate key
- If this is first change attempt for this column
- Change column name to a temporary column name
- If there was a conflicting row, replace it with the current row.
else
- Remove entry from column list
- Loop over all remaining columns in the list
- Remove the conflicting row
- Change column from temporary name to final name in column_stat
Other things:
- Don't flush tables for every operation. Only flush when all updates
are done.
- Rename of columns was not handled in case of ALGORITHM=copy (old bug).
- Fixed that we do not collect statistics for hidden hash columns
used by UNIQUE constraint on long values.
- Fixed that we do not collect statistics for blob columns referred by
generated virtual columns. This was achieved by storing the fields for
which we want to have statistics in table->has_value_set instead of
in table->read_set.
- Rename of indexes was not handled for persistent statistics.
- This is now handled similar as rename of columns. Renamed columns
are now stored in 'rename_stat_indexes' and handled in
Alter_info::delete_statistics() together with drooped indexes.
- ALTER TABLE .. ADD INDEX may instead of creating a new index rename
an existing generated foreign key index. This was not reflected in
the index_stats table because this was handled in
mysql_prepare_create_table instead instead of in the mysql_alter() code.
Fixed by adding a call in mysql_prepare_create_table() to drop the
changed index.
I also had to change the code that 'marked the index' to be ignored
with code that would not destroy the original index name.
Reviewer: Sergei Petrunia <sergey@mariadb.com>
At the moment we cannot support
wsrep_forced_binlog_format=[MIXED|STATEMENT]
during CREATE TABLE AS SELECT.
Statement will use ROW instead and give
a warning.
Signed-off-by: Julius Goryavsky <julius.goryavsky@mariadb.com>
On creation of a VIEW that depends on a stored routine an instance of
the class Item_func_sp is allocated on a memory root of SP statement.
It happens since mysql_make_view() calls the method
THD::activate_stmt_arena_if_needed()
before parsing definition of the view.
On the other hand, when sp_head's rcontext is created an instance of
the class Field referenced by the data member
Item_func_sp::result_field
is allocated on the Item_func_sp's Query_arena (call arena) that set up
inside the method
Item_sp::execute_impl
just before calling the method
sp_head::execute_function()
On return from the method sp_head::execute_function() all items allocated
on the Item_func_sp's Query_arena are released and its memory root is freed
(see implementation of the method Item_sp::execute_impl). As a consequence,
the pointer
Item_func_sp::result_field
references to the deallocated memory. Later, when the method
sp_head::execute
cleans up items allocated for just executed SP instruction the method
Item_func_sp::cleanup is invoked and tries to delete an object referenced
by data member Item_func_sp::result_field that points to already deallocated
memory, that results in a server abnormal termination.
To fix the issue the current active arena shouldn't be switched to
a statement arena inside the function mysql_make_view() that invoked indirectly
by the method sp_head::rcontext_create. It is implemented by introducing
the new Query_arena's state STMT_SP_QUERY_ARGUMENTS that is set when explicit
Query_arena is created for placing SP arguments and other caller's side items
used during SP execution. Then the method THD::activate_stmt_arena_if_needed()
checks Query_arena's state and returns immediately without switching to
statement's arena.
The problem was that parallel replication of temporary tables using
statement-based binlogging could overlap the COMMIT in one thread with a DML
or DROP TEMPORARY TABLE in another thread using the same temporary table.
Temporary tables are not safe for concurrent access, so this caused
reference to freed memory and possibly other nastiness.
The fix is to disable the optimisation with overlapping commits of one
transaction with the start of a later transaction, when temporary tables are
in use. Then the following event groups will be blocked from starting until
the one using temporary tables is completed.
This also fixes occasional test failures of rpl.rpl_parallel_temptable seen
in Buildbot.
Signed-off-by: Kristian Nielsen <knielsen@knielsen-hq.org>
mark old keys in the ALTER TABLE with the `old` flag, not with
the `key_create_info.check_for_duplicate_indexes`.
This allows to mark old foreign keys too.
ANALYZE FORMAT=JSON output now includes table.r_engine_stats which
has the engine statistics. Only non-zero members are printed.
Internally: EXPLAIN data structures Explain_table_acccess and
Explain_update now have handler* handler_for_stats pointer.
It is used to read statistics from handler_for_stats->handler_stats.
The following applies only to 10.9+, backport doesn't use it:
Explain data structures exist after the tables are closed. We avoid
walking invalid pointers using this:
- SQL layer calls Explain_query::notify_tables_are_closed() before
closing tables.
- After that call, printing of JSON output is disabled. Non-JSON output
can be printed but we don't access handler_for_stats when doing that.
- Moving the code from a public function trim_whitespaces()
to the class Lex_cstring as methods. This code may
be useful in other contexts, and also this code becomes
visible inside sql_class.h
- Adding a helper method THD::strmake_lex_cstring_trim_whitespaces()
- Unifying the way how CREATE PROCEDURE/CREATE FUNCTION and
CREATE PACKAGE/CREATE PACKAGE BODY work:
a) Now CREATE PACKAGE/CREATE PACKAGE BODY also calls
Lex->sphead->set_body_start() to remember the cpp body start inside
an sp_head member.
b) adding a "const char *cpp_body_end" parameter to
sp_head::set_stmt_end().
These changes made it possible to reuse sp_head::set_stmt_end() inside
LEX::create_package_finalize() and remove the duplucate code.
- Renaming sp_head::m_body_begin to m_cpp_body_begin and adding a comment
to make it clear that this member is used only during parsing, and
points to a fragment inside the cpp buffer.
- Changed sp_head::set_body_start() and sp_head::set_stmt_end()
to skip the calls related to "body_utf8" in cases when m_parent is not NULL.
A non-NULL m_parent means that we're inside a package routine.
"body_utf8" in such case belongs not to the current sphead itself,
but to parent (the package) sphead.
So an sphead instance of a package routine should neither initialize,
nor finalize, nor change in any other ways the "body_utf8" related
members of Lex_input_stream, and should not take over or copy "body_utf8"
data from Lex_input_stream to "this".
The problem is that when a worker thread is (user) killed in
wait_for_prior_commit, the event group may complete out-of-order since the
wait for prior commit was aborted by the kill.
This fix ensures that event groups will always complete in-order, even
in the error case. This is done in finish_event_group() by doing an
extra wait_for_prior_commit(), if necessary, that ignores kills.
This fix supersedes the fix for MDEV-30780, so the earlier fix for
that is reverted in this patch.
Also fix that an error from wait_for_prior_commit() inside
finish_event_group() would not signal the error to
wakeup_subsequent_commits().
Based on earlier work by Brandon Nesterenko and Andrei Elkin, with
some changes to simplify the semantics of wait_for_prior_commit() and
make the code more robust to future changes.
Reviewed-by: Andrei Elkin <andrei.elkin@mariadb.com>
Signed-off-by: Kristian Nielsen <knielsen@knielsen-hq.org>
Where a read-only server permits writes through replication, it
should not permit user connections to commit/rollback XA
transactions prepared via replication. The bug reported in
MDEV-30978 shows that this can happen. This is because there is no
read only check in the XA transaction logic, the most relevant one
occurs in ha_commit_trans() for normal statements/transactions.
This patch extends the XA transaction logic to check the read only
status of the server before performing an XA COMMIT or ROLLBACK.
Reviewed By:
Andrei Elkin <andrei.elkin@mariadb.com>
The new statistics is enabled by adding the "engine", "innodb" or "full"
option to --log-slow-verbosity
Example output:
# Pages_accessed: 184 Pages_read: 95 Pages_updated: 0 Old_rows_read: 1
# Pages_read_time: 17.0204 Engine_time: 248.1297
Page_read_time is time doing physical reads inside a storage engine.
(Writes cannot be tracked as these are usually done in the background).
Engine_time is the time spent inside the storage engine for the full
duration of the read/write/update calls. It uses the same code as
'analyze statement' for calculating the time spent.
The engine statistics is done with a generic interface that should be
easy for any engine to use. It can also easily be extended to provide
even more statistics.
Currently only InnoDB has counters for Pages_% and Undo_% status.
Engine_time works for all engines.
Implementation details:
class ha_handler_stats holds all engine stats. This class is included
in handler and THD classes.
While a query is running, all statistics is updated in the handler. In
close_thread_tables() the statistics is added to the THD.
handler::handler_stats is a pointer to where statistics should be
collected. This is set to point to handler::active_handler_stats if
stats are requested. If not, it is set to 0.
handler_stats has also an element, 'active' that is 1 if stats are
requested. This is to allow engines to avoid doing any 'if's while
updating the statistics.
Cloned or partition tables have the pointer set to the base table if
status are requested.
There is a small performance impact when using --log-slow-verbosity=engine:
- All engine calls in 'select' will be timed.
- IO calls for InnoDB reads will be timed.
- Incrementation of counters are done on local variables and accesses
are inline, so these should have very little impact.
- Statistics has to be reset for each statement for the THD and each
used handler. This is only 40 bytes, which should be neglectable.
- For partition tables we have to loop over all partitions to update
the handler_status as part of table_init(). Can be optimized in the
future to only do this is log-slow-verbosity changes. For this to work
we have to update handler_status for all opened partitions and
also for all partitions opened in the future.
Other things:
- Added options 'engine' and 'full' to log-slow-verbosity.
- Some of the new files in the test suite comes from Percona server, which
has similar status information.
- buf_page_optimistic_get(): Do not increment any counter, since we are
only validating a pointer, not performing any buf_pool.page_hash lookup.
- Added THD argument to save_explain_data_intern().
- Switched arguments for save_explain_.*_data() to have
always THD first (generates better code as other functions also have THD
first).
The problem is that a parallel replica would not immediately stop
running/queued transactions when issued STOP SLAVE. That is, it
allowed the current group of transactions to run, and sometimes the
transactions which belong to the next group could be started and run
through commit after STOP SLAVE was issued too, if the last group
had started committing. This would lead to long periods to wait for
all waiting transactions to finish.
This patch updates a parallel replica to try and abort immediately
and roll-back any ongoing transactions. The exception to this is any
transactions which are non-transactional (e.g. those modifying
sequences or non-transactional tables), and any prior transactions,
will be run to completion.
The specifics are as follows:
1. A new stage was added to SHOW PROCESSLIST output for the SQL
Thread when it is waiting for a replica thread to either rollback or
finish its transaction before stopping. This stage presents as
“Waiting for worker thread to stop”
2. Worker threads which error or are killed no longer perform GCO
cleanup if there is a concurrently running prior transaction. This
is because a worker thread scheduled to run in a future GCO could be
killed and incorrectly perform cleanup of the active GCO.
3. Refined cases when the FL_TRANSACTIONAL flag is added to GTID
binlog events to disallow adding it to transactions which modify
both transactional and non-transactional engines when the binlogging
configuration allow the modifications to exist in the same event,
i.e. when using binlog_direct_non_trans_update == 0 and
binlog_format == statement.
4. A few existing MTR tests relied on the completion of certain
transactions after issuing STOP SLAVE, and were re-recorded
(potentially with added synchronizations) under the new rollback
behavior.
Reviewed By
===========
Andrei Elkin <andrei.elkin@mariadb.com>
This commit contains a merge from 10.5-MDEV-29293-squash
into 10.6.
Although the bug MDEV-29293 was not reproducible with 10.6,
the fix contains several improvements for wsrep KILL query and
BF abort handling, and addresses the following issues:
* MDEV-30307 KILL command issued inside a transaction is
problematic for galera replication:
This commit will remove KILL TOI replication, so Galera side
transaction context is not lost during KILL.
* MDEV-21075 KILL QUERY maintains nodes data consistency but
breaks GTID sequence: This is fixed as well as KILL does not
use TOI, and thus does not change GTID state.
* MDEV-30372 Assertion in wsrep-lib state: This was caused by
BF abort or KILL when local transaction was in the middle
of group commit. This commit disables THD::killed handling
during commit, so the problem is avoided.
* MDEV-30963 Assertion failure !lock.was_chosen_as_deadlock_victim
in trx0trx.h:1065: The assertion happened when the victim was
BF aborted via MDL while it was committing. This commit changes
MDL BF aborts so that transactions which are committing cannot
be BF aborted via MDL. The RQG grammar attached in the issue
could not reproduce the crash anymore.
Original commit message from 10.5 fix:
MDEV-29293 MariaDB stuck on starting commit state
The problem seems to be a deadlock between KILL command execution
and BF abort issued by an applier, where:
* KILL has locked victim's LOCK_thd_kill and LOCK_thd_data.
* Applier has innodb side global lock mutex and victim trx mutex.
* KILL is calling innobase_kill_query, and is blocked by innodb
global lock mutex.
* Applier is in wsrep_innobase_kill_one_trx and is blocked by
victim's LOCK_thd_kill.
The fix in this commit removes the TOI replication of KILL command
and makes KILL execution less intrusive operation. Aborting the
victim happens now by using awake_no_mutex() and ha_abort_transaction().
If the KILL happens when the transaction is committing, the
KILL operation is postponed to happen after the statement
has completed in order to avoid KILL to interrupt commit
processing.
Notable changes in this commit:
* wsrep client connections's error state may remain sticky after
client connection is closed. This error message will then pop
up for the next client session issuing first SQL statement.
This problem raised with test galera.galera_bf_kill.
The fix is to reset wsrep client error state, before a THD is
reused for next connetion.
* Release THD locks in wsrep_abort_transaction when locking
innodb mutexes. This guarantees same locking order as with applier
BF aborting.
* BF abort from MDL was changed to do BF abort on server/wsrep-lib
side first, and only then do the BF abort on InnoDB side. This
removes the need to call back from InnoDB for BF aborts which originate
from MDL and simplifies the locking.
* Removed wsrep_thd_set_wsrep_aborter() from service_wsrep.h.
The manipulation of the wsrep_aborter can be done solely on
server side. Moreover, it is now debug only variable and
could be excluded from optimized builds.
* Remove LOCK_thd_kill from wsrep_thd_LOCK/UNLOCK to allow more
fine grained locking for SR BF abort which may require locking
of victim LOCK_thd_kill. Added explicit call for
wsrep_thd_kill_LOCK/UNLOCK where appropriate.
* Wsrep-lib was updated to version which allows external
locking for BF abort calls.
Changes to MTR tests:
* Disable galera_bf_abort_group_commit. This test is going to
be removed (MDEV-30855).
* Make galera_var_retry_autocommit result more readable by echoing
cases and expectations into result. Only one expected result for
reap to verify that server returns expected status for query.
* Record galera_gcache_recover_manytrx as result file was incomplete.
Trivial change.
* Make galera_create_table_as_select more deterministic:
Wait until CTAS execution has reached MDL wait for multi-master
conflict case. Expected error from multi-master conflict is
ER_QUERY_INTERRUPTED. This is because CTAS does not yet have open
wsrep transaction when it is waiting for MDL, query gets interrupted
instead of BF aborted. This should be addressed in separate task.
* A new test galera_bf_abort_registering to check that registering trx gets
BF aborted through MDL.
* A new test galera_kill_group_commit to verify correct behavior
when KILL is executed while the transaction is committing.
Co-authored-by: Seppo Jaakola <seppo.jaakola@iki.fi>
Co-authored-by: Jan Lindström <jan.lindstrom@galeracluster.com>
Signed-off-by: Julius Goryavsky <julius.goryavsky@mariadb.com>
The problem seems to be a deadlock between KILL command execution
and BF abort issued by an applier, where:
* KILL has locked victim's LOCK_thd_kill and LOCK_thd_data.
* Applier has innodb side global lock mutex and victim trx mutex.
* KILL is calling innobase_kill_query, and is blocked by innodb
global lock mutex.
* Applier is in wsrep_innobase_kill_one_trx and is blocked by
victim's LOCK_thd_kill.
The fix in this commit removes the TOI replication of KILL command
and makes KILL execution less intrusive operation. Aborting the
victim happens now by using awake_no_mutex() and ha_abort_transaction().
If the KILL happens when the transaction is committing, the
KILL operation is postponed to happen after the statement
has completed in order to avoid KILL to interrupt commit
processing.
Notable changes in this commit:
* wsrep client connections's error state may remain sticky after
client connection is closed. This error message will then pop
up for the next client session issuing first SQL statement.
This problem raised with test galera.galera_bf_kill.
The fix is to reset wsrep client error state, before a THD is
reused for next connetion.
* Release THD locks in wsrep_abort_transaction when locking
innodb mutexes. This guarantees same locking order as with applier
BF aborting.
* BF abort from MDL was changed to do BF abort on server/wsrep-lib
side first, and only then do the BF abort on InnoDB side. This
removes the need to call back from InnoDB for BF aborts which originate
from MDL and simplifies the locking.
* Removed wsrep_thd_set_wsrep_aborter() from service_wsrep.h.
The manipulation of the wsrep_aborter can be done solely on
server side. Moreover, it is now debug only variable and
could be excluded from optimized builds.
* Remove LOCK_thd_kill from wsrep_thd_LOCK/UNLOCK to allow more
fine grained locking for SR BF abort which may require locking
of victim LOCK_thd_kill. Added explicit call for
wsrep_thd_kill_LOCK/UNLOCK where appropriate.
* Wsrep-lib was updated to version which allows external
locking for BF abort calls.
Changes to MTR tests:
* Disable galera_bf_abort_group_commit. This test is going to
be removed (MDEV-30855).
* Record galera_gcache_recover_manytrx as result file was incomplete.
Trivial change.
* Make galera_create_table_as_select more deterministic:
Wait until CTAS execution has reached MDL wait for multi-master
conflict case. Expected error from multi-master conflict is
ER_QUERY_INTERRUPTED. This is because CTAS does not yet have open
wsrep transaction when it is waiting for MDL, query gets interrupted
instead of BF aborted. This should be addressed in separate task.
* A new test galera_kill_group_commit to verify correct behavior
when KILL is executed while the transaction is committing.
Co-authored-by: Seppo Jaakola <seppo.jaakola@iki.fi>
Co-authored-by: Jan Lindström <jan.lindstrom@galeracluster.com>
Signed-off-by: Julius Goryavsky <julius.goryavsky@mariadb.com>
This is a backport from 10.5.
The problem seems to be a deadlock between KILL command execution
and BF abort issued by an applier, where:
* KILL has locked victim's LOCK_thd_kill and LOCK_thd_data.
* Applier has innodb side global lock mutex and victim trx mutex.
* KILL is calling innobase_kill_query, and is blocked by innodb
global lock mutex.
* Applier is in wsrep_innobase_kill_one_trx and is blocked by
victim's LOCK_thd_kill.
The fix in this commit removes the TOI replication of KILL command
and makes KILL execution less intrusive operation. Aborting the
victim happens now by using awake_no_mutex() and ha_abort_transaction().
If the KILL happens when the transaction is committing, the
KILL operation is postponed to happen after the statement
has completed in order to avoid KILL to interrupt commit
processing.
Notable changes in this commit:
* wsrep client connections's error state may remain sticky after
client connection is closed. This error message will then pop
up for the next client session issuing first SQL statement.
This problem raised with test galera.galera_bf_kill.
The fix is to reset wsrep client error state, before a THD is
reused for next connetion.
* Release THD locks in wsrep_abort_transaction when locking
innodb mutexes. This guarantees same locking order as with applier
BF aborting.
* BF abort from MDL was changed to do BF abort on server/wsrep-lib
side first, and only then do the BF abort on InnoDB side. This
removes the need to call back from InnoDB for BF aborts which originate
from MDL and simplifies the locking.
* Removed wsrep_thd_set_wsrep_aborter() from service_wsrep.h.
The manipulation of the wsrep_aborter can be done solely on
server side. Moreover, it is now debug only variable and
could be excluded from optimized builds.
* Remove LOCK_thd_kill from wsrep_thd_LOCK/UNLOCK to allow more
fine grained locking for SR BF abort which may require locking
of victim LOCK_thd_kill. Added explicit call for
wsrep_thd_kill_LOCK/UNLOCK where appropriate.
* Wsrep-lib was updated to version which allows external
locking for BF abort calls.
Changes to MTR tests:
* Disable galera_bf_abort_group_commit. This test is going to
be removed (MDEV-30855).
* Record galera_gcache_recover_manytrx as result file was incomplete.
Trivial change.
* Make galera_create_table_as_select more deterministic:
Wait until CTAS execution has reached MDL wait for multi-master
conflict case. Expected error from multi-master conflict is
ER_QUERY_INTERRUPTED. This is because CTAS does not yet have open
wsrep transaction when it is waiting for MDL, query gets interrupted
instead of BF aborted. This should be addressed in separate task.
* A new test galera_kill_group_commit to verify correct behavior
when KILL is executed while the transaction is committing.
Co-authored-by: Seppo Jaakola <seppo.jaakola@iki.fi>
Co-authored-by: Jan Lindström <jan.lindstrom@galeracluster.com>
Signed-off-by: Julius Goryavsky <julius.goryavsky@mariadb.com>
