CRASHES INNODB | TRX_STATE_NOT_STARTED
The problem was that if DELETE with subselect caused a
deadlock inside InnoDB, this deadlock was not properly
handled by the SQL layer. This meant that the SQL layer
would try to unlock the row after InnoDB had rolled
back the transaction. This caused an assertion inside
InnoDB.
This patch fixes the problem by checking for errors
reported by SQL_SELECT::skip_record() and not calling
unlock_row() if any errors have been reported.
Problem
========
Replication breaks in the cases if the event length exceeds
the size of master Dump thread's max_allowed_packet.
The reason why this failure is occuring is because the event length is
more than the total size of the max_allowed_packet, on addition of the
max_event_header length exceeds the max_allowed_packet of the DUMP thread.
This causes the Dump thread to break replication and throw an error.
That can happen e.g with row-based replication in Update_rows event.
Fix
====
The problem is fixed in 2 steps:
1.) The Dump thread limit to read event is increased to the upper limit
i.e. Dump thread reads whatever gets logged in the binary log.
2.) On the slave side we increase the the max_allowed_packet for the
slave's threads (IO/SQL) by increasing it to 1GB.
This is done using the new server option (slave_max_allowed_packet)
included, is used to regulate the max_allowed_packet of the
slave thread (IO/SQL) by the DBA, and facilitates the sending of
large packets from the master to the slave.
This causes the large packets to be received by the slave and apply
it successfully.
sql/log_event.cc:
The max_allowed_packet is not evaluated to the new option
slave_max_allowed_packet after the fix.
sql/log_event.h:
Added the new option in the log_event.h file.
sql/mysqld.cc:
Added a new option to the server.
sql/slave.cc:
Increasing the session max_allowed_packet to a large value,
i.e. not taking global(max_allowed) into consideration, for the slave's threads.
sql/sql_repl.cc:
The dump thread's max_allowed_packet is set to the upper limit
which makes it independent and it now reads whatever gets
logged in the binary log.
Changes in the InnoDB codebase required to compile and
integrate the MEB codebase with MySQL 5.5.
@ storage/innobase/btr/btr0btr.c
Excluded buffer pool usage from MEB build.
buf_pool_from_bpage calls are in buf0buf.ic, and
the buffer pool functions from that file are
disabled in MEB.
@ storage/innobase/buf/buf0buf.c
Disabling more buffer pool functions unused in MEB.
@ storage/innobase/dict/dict0dict.c
Disabling dict_ind_free that is unused in MEB.
@ storage/innobase/dict/dict0mem.c
The include
#include "ha_prototypes.h"
Was causing conflicts with definitions in my_global.h
Linking C executable mysqlbackup
libinnodb.a(dict0mem.c.o): In function `dict_mem_foreign_table_name_lookup_set':
dict0mem.c:(.text+0x91c): undefined reference to `innobase_get_lower_case_table_names'
libinnodb.a(dict0mem.c.o): In function `dict_mem_referenced_table_name_lookup_set':
dict0mem.c:(.text+0x9fc): undefined reference to `innobase_get_lower_case_table_names'
libinnodb.a(dict0mem.c.o): In function `dict_mem_foreign_table_name_lookup_set':
dict0mem.c:(.text+0x96e): undefined reference to `innobase_casedn_str'
libinnodb.a(dict0mem.c.o): In function `dict_mem_referenced_table_name_lookup_set':
dict0mem.c:(.text+0xa4e): undefined reference to `innobase_casedn_str'
collect2: ld returned 1 exit status
make[2]: *** [mysqlbackup] Error 1
innobase_get_lower_case_table_names
innobase_casedn_str
are functions that are part of ha_innodb.cc that is not part of the build
dict_mem_foreign_table_name_lookup_set
function is not there in the current codebase, meaning we do not use it in MEB.
@ storage/innobase/fil/fil0fil.c
The srv_fast_shutdown variable is declared in
srv0srv.c that is not compiled in the
mysqlbackup codebase.
This throws an undeclared error.
From the Manual
---------------
innodb_fast_shutdown
--------------------
The InnoDB shutdown mode. The default value is 1
as of MySQL 3.23.50, which causes a “fast� shutdown
(the normal type of shutdown). If the value is 0,
InnoDB does a full purge and an insert buffer merge
before a shutdown. These operations can take minutes,
or even hours in extreme cases. If the value is 1,
InnoDB skips these operations at shutdown.
This ideally does not matter from mysqlbackup
@ storage/innobase/ha/ha0ha.c
In file included from /home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/ha/ha0ha.c:34:0:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/btr0sea.h:286:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
make[2]: *** [CMakeFiles/innodb.dir/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/ha/ha0ha.c.o] Error 1
make[1]: *** [CMakeFiles/innodb.dir/all] Error 2
make: *** [all] Error 2
# include "sync0rw.h" is excluded from hotbackup compilation in dict0dict.h
This causes extern rw_lock_t* btr_search_latch_temp; to throw a failure because
the definition of rw_lock_t is not found.
@ storage/innobase/include/buf0buf.h
Excluding buffer pool functions that are unused from the
MEB codebase.
@ storage/innobase/include/buf0buf.ic
replicated the exclusion of
#include "buf0flu.h"
#include "buf0lru.h"
#include "buf0rea.h"
by looking at the current codebase in <meb-trunk>/src/innodb
@ storage/innobase/include/dict0dict.h
dict_table_x_lock_indexes, dict_table_x_unlock_indexes, dict_table_is_corrupted,
dict_index_is_corrupted, buf_block_buf_fix_inc_func are unused in MEB and was
leading to compilation errors and hence excluded.
@ storage/innobase/include/dict0dict.ic
dict_table_x_lock_indexes, dict_table_x_unlock_indexes, dict_table_is_corrupted,
dict_index_is_corrupted, buf_block_buf_fix_inc_func are unused in MEB and was
leading to compilation errors and hence excluded.
@ storage/innobase/include/log0log.h
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/log0log.h: At top level:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/log0log.h:767:2: error: expected specifier-qualifier-list before â⠂¬Ëœmutex_t’
mutex_t definitions were excluded as seen from ambient code
hence excluding definition for log_flush_order_mutex also.
@ storage/innobase/include/os0file.h
Bug in InnoDB code, create_mode should have been create.
@ storage/innobase/include/srv0srv.h
In file included from /home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/buf/buf0buf.c:50:0:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/srv0srv.h: At top level:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/srv0srv.h:120:16: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘srv_use_native_aio’
srv_use_native_aio - we do not use native aio of the OS anyway from MEB. MEB does not compile
InnoDB with this option. Hence disabling it.
@ storage/innobase/include/trx0sys.h
[ 56%] Building C object CMakeFiles/innodb.dir/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c.o
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c: In function ‘trx_sys_read_file_format_id’:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c:1499:20: error: ‘TRX_SYS_FILE_FORMAT_TAG_MAGIC_N’ undeclared (first use in this function)
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c:1499:20: note: each undeclared identifier is reported only once for each function it appears in
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c: At top level:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/buf0buf.h:607:1: warning: ‘buf_block_buf_fix_inc_func’ declared ‘static’ but never defined
make[2]: *** [CMakeFiles/innodb.dir/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c.o] Error 1
unused calls excluded to enable compilation
@ storage/innobase/mem/mem0dbg.c
excluding #include "ha_prototypes.h" that lead to definitions in ha_innodb.cc
@ storage/innobase/os/os0file.c
InnoDB not compiled with aio support from MEB anyway. Hence excluding this from
the compilation.
@ storage/innobase/page/page0zip.c
page0zip.c:(.text+0x4e9e): undefined reference to `buf_pool_from_block'
collect2: ld returned 1 exit status
buf_pool_from_block defined in buf0buf.ic, most of the file is excluded for compilation of MEB
@ storage/innobase/ut/ut0dbg.c
excluding #include "ha_prototypes.h" since it leads to definitions in ha_innodb.cc
innobase_basename(file) is defined in ha_innodb.cc. Hence excluding that also.
@ storage/innobase/ut/ut0ut.c
cal_tm unused from MEB, was leading to earnings, hence disabling for MEB.
WHEN KILLING
Suppose there is a query waiting for a lock. If the user kills
this query, then "Got error -1 when reading table" error message
must not be logged in the server log file. Since this is a user
requested interruption, no spurious error message must be logged
in the server log. This patch will remove the error message from
the log.
approved by joh and tatjana
Fixed by backport of:
------------------------------------------------------------
revno: 3402.50.156
committer: Jon Olav Hauglid <jon.hauglid@oracle.com>
branch nick: mysql-trunk-test
timestamp: Wed 2012-02-08 14:10:23 +0100
message:
Bug#13417754 ASSERT IN ROW_DROP_DATABASE_FOR_MYSQL DURING DROP SCHEMA
This assert could be triggered if an InnoDB table was being moved
to a different database using ALTER TABLE ... RENAME, while this
database concurrently was being dropped by DROP DATABASE.
The reason for the problem was that no metadata lock was taken
on the target database by ALTER TABLE ... RENAME.
DROP DATABASE was therefore not blocked and could remove
the database while ALTER TABLE ... RENAME was executing. This
could cause the assert in InnoDB to be triggered.
This patch fixes the problem by taking a IX metadata lock on
the target database before ALTER TABLE ... RENAME starts
moving a table to a different database.
Note that this problem did not occur with RENAME TABLE which
already takes the correct metadata locks.
Also note that this patch slightly changes the behavior of
ALTER TABLE ... RENAME. Before, the statement would abort and
return an error if a lock on the target table name could not
be taken immediately. With this patch, ALTER TABLE ... RENAME
will instead block and wait until the lock can be taken
(or until we get a lock timeout). This also means that it is
possible to get ER_LOCK_DEADLOCK errors in this situation
since we allow ALTER TABLE ... RENAME to wait and not just
abort immediately.
Problem
========
Replication breaks in the cases if the event length exceeds
the size of master Dump thread's max_allowed_packet.
The reason why this failure is occuring is because the event length is
more than the total size of the max_allowed_packet, on addition of the
max_event_header length exceeds the max_allowed_packet of the DUMP thread.
This causes the Dump thread to break replication and throw an error.
That can happen e.g with row-based replication in Update_rows event.
Fix
====
The problem is fixed in 2 steps:
1.) The Dump thread limit to read event is increased to the upper limit
i.e. Dump thread reads whatever gets logged in the binary log.
2.) On the slave side we increase the the max_allowed_packet for the
slave's threads (IO/SQL) by increasing it to 1GB.
This is done using the new server option (slave_max_allowed_packet)
included, is used to regulate the max_allowed_packet of the
slave thread (IO/SQL) by the DBA, and facilitates the sending of
large packets from the master to the slave.
This causes the large packets to be received by the slave and apply
it successfully.
sql/log_event.cc:
The max_allowed_packet is not evaluated to the new option
slave_max_allowed_packet after the fix.
sql/log_event.h:
Added the new option in the log_event.h file.
sql/mysqld.cc:
Added a new option to the server.
sql/slave.cc:
Increasing the session max_allowed_packet to a large value,
i.e. not taking global(max_allowed) into consideration, for the slave's threads.
sql/sql_repl.cc:
The dump thread's max_allowed_packet is set to the upper limit
which makes it independent and it now reads whatever gets
logged in the binary log.
WHEN KILLING
Suppose there is a query waiting for a lock. If the user kills
this query, then "Got error -1 when reading table" error message
must not be logged in the server log file. Since this is a user
requested interruption, no spurious error message must be logged
in the server log. This patch will remove the error message from
the log.
approved by joh and tatjana
Problem: mysqlbinlog exits without any error code in case of
file write error. It is because of the fact that the calls
to Log_event::print() method does not return a value and the
thus any error were being ignored.
Resolution: We resolve this problem by checking for the
IO_CACHE::error == -1 after every call to Log_event:: print()
and terminating the further execution.
client/mysqlbinlog.cc:
- handled error conditions during event->print() calls
- added check for error in end_io_cache()
mysys/my_write.c:
Added debug code to simulate file write error.
error returned will be ENOSPC=> error no space on the disk
sql/log_event.cc:
Added debug code to simulate file write error, by reducing the size of io cache.
Analysis:
-------------
If server is started with limit of MAX_CONNECTIONS and
MAX_USER_CONNECTIONS then only MAX_USER_CONNECTIONS of any particular
users can be connected to server and total MAX_CONNECTIONS of client can
be connected to server.
Server maintains a counter for total CONNECTIONS and total CONNECTIONS
from particular user.
Here, MAX_CONNECTIONS of connections are created to server. Out of this
MAX_CONNECTIONS, connections from particular user (say USER1) are
also created. The connections from USER1 is lesser than
MAX_USER_CONNECTIONS. After that there was one more connection request from
USER1. Since USER1 can still create connections as he havent reached
MAX_USER_CONNECTIONS, server increments counter of CONNECTIONS per user.
As server already has MAX_CONNECTIONS of connections, next check to total
CONNECTION count fails. In this case control is returned WITHOUT
decrementing the CONNECTIONS per user. So the counter per user CONNECTIONS goes
on incrementing for each attempt until current connections are closed.
And because of this counter per CONNECTIONS reached MAX_USER_CONNECTIONS.
So, next connections form USER1 user always returns with MAX_USER_CONNECTION
limit error, even when total connection to sever are less than MAX_CONNECTIONS.
Fix:
-------------
This issue is occurred because of not handling counters properly in the
server. Changed the code to handle per user connection counters properly.
Details:
- Archive storage engine file access were not instrumented and thus
were not shown in PS tables.
Fix:
- Added instrumentation code by using PS Apis for I/O.
rb://1088
approved by: Marko Makela
This bug was introduced in early stages of plugin. We were not
checking for an implicit lock on sec index rec for trx_id that is
stamped on current version of the clust_index in case where the
clust_index has a previous delete marked version.
IN THE ERROR LOG
Problem:
Using mysqlbinlog with the --read-from-remote-server option as shown below
prints a message in error log for each call. This happens for 5.5 and above
versions
mysqlbinlog -uroot -p --read-from-remote-server --host=localhost test
Message in error log file is given below:
120312 10:27:57 [Note] Start binlog_dump to slave_server(0), pos(test, 4)
The problem is that it can fill up the error log if the command is called
very often.
Analysis:
The below mentioned print function is called from "mysql_binlog_send" function
which causes the "Start binlog_dump..." string to be printed in error log file.
sql_print_information("Start binlog_dump to master_thread_id(%lu)
slave_server(%d)..."
Fix:
A condition has been added in such a way that the 'sql_print_information'
will be invoked only when the "log_warnings" variable is set to >1
otherwise don't call the 'sql_print_information' function.
updating the result file. Because a multi-row insert now reserves the
auto increment values before hand, if any explicitly specified auto
increment values are there, then some of the reserved values are lost.
INNODB_AUTOINC_LOCK_MODE=1 AND USING TRIGGER
When an insert stmt like "insert into t values (1),(2),(3)" is
executed, the autoincrement values assigned to these three rows are
expected to be contiguous. In the given lock mode
(innodb_autoinc_lock_mode=1), the auto inc lock will be released
before the end of the statement. So to make the autoincrement
contiguous for a given statement, we need to reserve the auto inc
values at the beginning of the statement.
Modified the fix based on review comment by Svoj.
This is a followup to the fix for Bug#12340997
get_interval_value() was trying to parse the input string,
looking for leading '-' while skipping whitespace.
The macro my_isspace() does not work for utf32 character set,
since my_charset_utf32_general_ci.ctype == NULL.
Solution: convert input to ASCII before parsing,
and use the character set of the returned ASCII string.
Problem
========
SQL statements close to the size of max_allowed_packet produce binary
log events larger than max_allowed_packet.
The reason why this failure is occuring is because the event length is
more than the total size of the max_allowed_packet + max_event_header
length. Now since the event length exceeds this size master Dump
thread is unable to send the packet on to the slave.
That can happen e.g with row-based replication in Update_rows event.
Fix
====
The problem was fixed by increasing the max_allowed_packet for the
slave's threads (IO/SQL) by increasing it to 1GB.
This is done using the new server option included which is used to
regulate the max_allowed_packet of the slave thread (IO/SQL).
This causes the large packets to be received by the slave and apply
it successfully.
sql/log_event.h:
Added the new option in the log_event.h file.
sql/mysqld.cc:
Added a new option to the server.
sql/slave.cc:
Increasing the session max_allowed_packet to a large value ,
i.e. not taking global(max_allowed) into consideration, for the slave's threads.
Problem: After the fix for Bug#12589870, a new field that
stores the length of db name was added in the buffer that
stores the query to be executed. Unlike for the plain user
session, the replication execution did not allocate the
necessary chunk in Query-event constructor. This caused an
invalid read while accessing this field.
Solution: We fix this problem by allocating a necessary chunk
in the buffer created in the Query_log_event::Query_log_event()
and store the length of database name.
sql/log_event.cc:
Added a new field in the buffer created in the
Query_log_event's constructor and store the length
of database name.
PROBLEM:
Threads end-up in deadlock due to locks acquired as described
below,
con1: Run Query on a table.
It is important that this SELECT must back-off while
trying to open the t1 and enter into wait_for_condition().
The SELECT then is blocked trying to lock mysys_var->mutex
which is held by con3. The very significant fact here is
that mysys_var->current_mutex will still point to LOCK_open,
even if LOCK_open is no longer held by con1 at this point.
con2: Try dropping table used in con1 or query some table.
It will hold LOCK_open and be blocked trying to lock
kernel_mutex held by con4.
con3: Try killing the query run by con1.
It will hold THD::LOCK_thd_data belonging to con1 while
trying to lock mysys_var->current_mutex belonging to con1.
But current_mutex will point to LOCK_open which is held
by con2.
con4: Get innodb engine status
It will hold kernel_mutex, trying to lock THD::LOCK_thd_data
belonging to con1 which is held by con3.
So while technically only con2, con3 and con4 participate in the
deadlock, con1's mysys_var->current_mutex pointing to LOCK_open
is a vital component of the deadlock.
CYCLE = (THD::LOCK_thd_data -> LOCK_open ->
kernel_mutex -> THD::LOCK_thd_data)
FIX:
LOCK_thd_data has responsibility of protecting,
1) thd->query, thd->query_length
2) VIO
3) thd->mysys_var (used by KILL statement and shutdown)
4) THD during thread delete.
Among above responsibilities, 1), 2)and (3,4) seems to be three
independent group of responsibility. If there is different LOCK
owning responsibility of (3,4), the above mentioned deadlock cycle
can be avoid. This fix introduces LOCK_thd_kill to handle
responsibility (3,4), which eliminates the deadlock issue.
Note: The problem is not found in 5.5. Introduction MDL subsystem
caused metadata locking responsibility to be moved from TDC/TC to
MDL subsystem. Due to this, responsibility of LOCK_open is reduced.
As the use of LOCK_open is removed in open_table() and
mysql_rm_table() the above mentioned CYCLE does not form.
Revision ID for changes,
open_table() = dlenev@mysql.com-20100727133458-m3ua9oslnx8fbbvz
mysql_rm_table() = jon.hauglid@oracle.com-20101116100012-kxep9txz2fxy3nmw
The following scenario crashes our mysql server:
1. set global innodb_file_per_table=1;
2. create table t1(c1 int) engine=innodb;
3. alter table t1 discard tablespace;
4. alter table t1 add unique index(c1);
Step 4 crashes the server. This patch introduces a check on discarded
tablespace to avoid the crash.
rb://1041 approved by Marko Makela
FULLTEXT INDEX AND CONCURRENT DML.
Problem Statement:
------------------
1) Create a table with FT index.
2) Enable concurrent inserts.
3) In multiple threads do below operations repeatedly
a) truncate table
b) insert into table ....
c) select ... match .. against .. non-boolean/boolean mode
After some time we could observe two different assert core dumps
Analysis:
--------
1)assert core dump at key_read_cache():
Two select threads operating in-parallel on same key
root block.
1st select thread block->status is set to BLOCK_ERROR
because the my_pread() in read_block() is returning '0'.
Truncate table made the index file size as 1024 and pread
was asked to get the block of count bytes(1024 bytes)
from offset of 1024 which it cannot read since its
"end of file" and retuning '0' setting
"my_errno= HA_ERR_FILE_TOO_SHORT" and the key_file_length,
key_root[0] is same i.e. 1024. Since block status has BLOCK_ERROR
the 1st select thread enter into the free_block() and will
be under wait on conditional mutex by making status as
BLOCK_REASSIGNED and goes for wait_on_readers(). Other select
thread will also work on the same block and sees the status as
BLOCK_ERROR and enters into free_block(), checks for BLOCK_REASSIGNED
and asserting the server.
2)assert core dump at key_write_cache():
One select thread and One insert thread.
Select thread gets the unlocks the 'keycache->cache_lock',
which allows other threads to continue and gets the pread()
return value as'0'(please see the explanation above) and
tries to get the lock on 'keycache->cache_lock' and waits
there for the lock.
Insert thread requests for the block, block will be assigned
from the hash list and makes the page_status as
'PAGE_WAIT_TO_BE_READ' and goes for the read_block(), waits
in the queue since there are some other threads performing
reads on the same block.
Select thread which was waiting for the 'keycache->cache_lock'
mutex in the read_block() will continue after getting the my_pread()
value as '0' and sets the block status as BLOCK_ERROR and goes to
the free_block() and go to the wait_for_readers().
Now the insert thread will awake and continues. and checks
block->status as not BLOCK_READ and it asserts.
Fix:
---
In the full text code, multiple readers of index file is not guarded.
Hence added below below code in _ft2_search() and walk_and_match().
to lock the key_root I have used below code in _ft2_search()
if (info->s->concurrent_insert)
mysql_rwlock_rdlock(&share->key_root_lock[0]);
and to unlock
if (info->s->concurrent_insert)
mysql_rwlock_unlock(&share->key_root_lock[0]);
storage/myisam/ft_boolean_search.c:
Since its a recursion function, to avoid confusion in taking and
releasing the locks, renamed _ft2_search() to _ft2_search_internal()
function. And _ft2_search() will take the lock, call
_ft2_search_internal() and release the lock in case of concurrent
inserts.
storage/myisam/ft_nlq_search.c:
Added read locks code in walk_and_match()
INNODB_AUTOINC_LOCK_MODE=1 AND USING TRIGGER
When an insert stmt like "insert into t values (1),(2),(3)" is
executed, the autoincrement values assigned to these three rows are
expected to be contiguous. In the given lock mode
(innodb_autoinc_lock_mode=1), the auto inc lock will be released
before the end of the statement. So to make the autoincrement
contiguous for a given statement, we need to reserve the auto inc
values at the beginning of the statement.
rb://1074 approved by Alexander Nozdrin
