MDEV-25604 Atomic DDL: Binlog event written upon recovery does not
have default database
The purpose of this task is to ensure that ALTER TABLE is atomic even if
the MariaDB server would be killed at any point of the alter table.
This means that either the ALTER TABLE succeeds (including that triggers,
the status tables and the binary log are updated) or things should be
reverted to their original state.
If the server crashes before the new version is fully up to date and
commited, it will revert to the original table and remove all
temporary files and tables.
If the new version is commited, crash recovery will use the new version,
and update triggers, the status tables and the binary log.
The one execption is ALTER TABLE .. RENAME .. where no changes are done
to table definition. This one will work as RENAME and roll back unless
the whole statement completed, including updating the binary log (if
enabled).
Other changes:
- Added handlerton->check_version() function to allow the ddl recovery
code to check, in case of inplace alter table, if the table in the
storage engine is of the new or old version.
- Added handler->table_version() so that an engine can report the current
version of the table. This should be changed each time the table
definition changes.
- Added ha_signal_ddl_recovery_done() and
handlerton::signal_ddl_recovery_done() to inform all handlers when
ddl recovery has been done. (Needed by InnoDB).
- Added handlerton call inplace_alter_table_committed, to signal engine
that ddl_log has been closed for the alter table query.
- Added new handerton flag
HTON_REQUIRES_NOTIFY_TABLEDEF_CHANGED_AFTER_COMMIT to signal when we
should call hton->notify_tabledef_changed() during
mysql_inplace_alter_table. This was required as MyRocks and InnoDB
needed the call at different times.
- Added function server_uuid_value() to be able to generate a temporary
xid when ddl recovery writes the query to the binary log. This is
needed to be able to handle crashes during ddl log recovery.
- Moved freeing of the frm definition to end of mysql_alter_table() to
remove duplicate code and have a common exit strategy.
-------
InnoDB part of atomic ALTER TABLE
(Implemented by Marko Mäkelä)
innodb_check_version(): Compare the saved dict_table_t::def_trx_id
to determine whether an ALTER TABLE operation was committed.
We must correctly recover dict_table_t::def_trx_id for this to work.
Before purge removes any trace of DB_TRX_ID from system tables, it
will make an effort to load the user table into the cache, so that
the dict_table_t::def_trx_id can be recovered.
ha_innobase::table_version(): return garbage, or the trx_id that would
be used for committing an ALTER TABLE operation.
In InnoDB, table names starting with #sql-ib will remain special:
they will be dropped on startup. This may be revisited later in
MDEV-18518 when we implement proper undo logging and rollback
for creating or dropping multiple tables in a transaction.
Table names starting with #sql will retain some special meaning:
dict_table_t::parse_name() will not consider such names for
MDL acquisition, and dict_table_rename_in_cache() will treat such
names specially when handling FOREIGN KEY constraints.
Simplify InnoDB DROP INDEX.
Prevent purge wakeup
To ensure that dict_table_t::def_trx_id will be recovered correctly
in case the server is killed before ddl_log_complete(), we will block
the purge of any history in SYS_TABLES, SYS_INDEXES, SYS_COLUMNS
between ha_innobase::commit_inplace_alter_table(commit=true)
(purge_sys.stop_SYS()) and purge_sys.resume_SYS().
The completion callback purge_sys.resume_SYS() must be between
ddl_log_complete() and MDL release.
--------
MyRocks support for atomic ALTER TABLE
(Implemented by Sergui Petrunia)
Implement these SE API functions:
- ha_rocksdb::table_version()
- hton->check_version = rocksdb_check_versionMyRocks data dictionary
now stores table version for each table.
(Absence of table version record is interpreted as table_version=0,
that is, which means no upgrade changes are needed)
- For inplace alter table of a partitioned table, call the underlying
handlerton when checking if the table is ok. This assumes that the
partition engine commits all changes at once.
Logging logic:
- Log tables, just before they are dropped, to the ddl log
- After the last table for the statement is dropped, log an xid for the
whole ddl log event
In case of crash:
- Remove first any active DROP TABLE events from the ddl log that matches
xids found in binary log (this mean the drop was successful and was
propery logged).
- Loop over all active DROP TABLE events
- Ensure that the table is completely dropped
- Write a DROP TABLE entry to the binary log with the dropped tables.
Other things:
- Added code to ha_drop_table() to be able to tell the difference if
a get_new_handler() failed because of out-of-memory or because the
handler refused/was not able to create a a handler. This was needed
to get sequences to work as sequences needs a share object to be passed
to get_new_handler()
- TC_LOG_BINLOG::recover() was changed to always collect Xid's from the
binary log and always call ddl_log_close_binlogged_events(). This was
needed to be able to collect DROP TABLE events with embedded Xid's
(used by ddl log).
- Added a new variable "$grep_script" to binlog filter to be able to find
only rows that matches a regexp.
- Had to adjust some test that changed because drop statements are a bit
larger in the binary log than before (as we have to store the xid)
Other things:
- MDEV-25588 Atomic DDL: Binlog query event written upon recovery is corrupt
fixed (in the original commit).
This patch changes the main name of 3 byte character set from utf8 to
utf8mb3. New old_mode UTF8_IS_UTF8MB3 is added and set TRUE by default,
so that utf8 would mean utf8mb3. If not set, utf8 would mean utf8mb4.
Problem:
=======
In slave_parallel_mode=optimistic configuration, when admin commands and
DML operation on the same table are scheduled simultaneously for execution,
it results in lock conflict and slave server either hangs due to
deadlock or goes down with an assert.
Analysis:
========
Admin commands OPTIMIZE, REPAIR and ANALYZE are written to binary log as
ordinary transactions. When 'slave_parallel_mode' is 'optimistic' DMLs are
allowed to run in parallel. But these locks are not detected by parallel
replication deadlock detection-and-handling mechanism. At times they result
in deadlock or assertion.
Fix:
===
Flag admin commands as DDL in Gtid_log_event at the time of writing to
binary log. Add a new bit EXECUTED_TABLE_ADMIN_CMD to
'm_unsafe_rollback_flags'. During 'mysql_admin_table' command execution it
accepts a list of tables to be processed and executes them in a loop. Upon
successful execution enable 'EXECUTED_TABLE_ADMIN_CMD' bit in
thd->transaction.stmt_unsafe_rollback_flags. Gtid_log_event constructor
will notice this flag and mark the current transaction with 'FL_DDL' flag.
Gtid_log_events marked as FL_DDL will not be scheduled parallel execution,
on the slave. They will execute in isolation to prevent deadlocks.
Note: Removed the call to 'trans_commit_implicit' from 'mysql_admin_table'
function as 'mysql_execute_command' will take care of invoking
'trans_commit_implicit'.
galera_var_wsrep_on_off : Add wait conditions to make sure DDL is
replicated before continuing.
wsrep.[variables|variables_debug] : Remove unnecessary parts
and add check to correct number of variables or skip
galera_ssl_reload: Add version check and SSL checks.
galera_var_wsrep_on_off : Add wait conditions to make sure DDL is
replicated before continuing.
wsrep.[variables|variables_debug] : Remove unnecessary parts
and add check to correct number of variables or skip
galera_ssl_reload: Add version check and SSL checks.
The easiest way to compile and test the server with UBSAN is to run:
./BUILD/compile-pentium64-ubsan
and then run mysql-test-run.
After this commit, one should be able to run this without any UBSAN
warnings. There is still a few compiler warnings that should be fixed
at some point, but these do not expose any real bugs.
The 'special' cases where we disable, suppress or circumvent UBSAN are:
- ref10 source (as here we intentionally do some shifts that UBSAN
complains about.
- x86 version of optimized int#korr() methods. UBSAN do not like unaligned
memory access of integers. Fixed by using byte_order_generic.h when
compiling with UBSAN
- We use smaller thread stack with ASAN and UBSAN, which forced me to
disable a few tests that prints the thread stack size.
- Verifying class types does not work for shared libraries. I added
suppression in mysql-test-run.pl for this case.
- Added '#ifdef WITH_UBSAN' when using integer arithmetic where it is
safe to have overflows (two cases, in item_func.cc).
Things fixed:
- Don't left shift signed values
(byte_order_generic.h, mysqltest.c, item_sum.cc and many more)
- Don't assign not non existing values to enum variables.
- Ensure that bool and enum values are properly initialized in
constructors. This was needed as UBSAN checks that these types has
correct values when one copies an object.
(gcalc_tools.h, ha_partition.cc, item_sum.cc, partition_element.h ...)
- Ensure we do not called handler functions on unallocated objects or
deleted objects.
(events.cc, sql_acl.cc).
- Fixed bugs in Item_sp::Item_sp() where we did not call constructor
on Query_arena object.
- Fixed several cast of objects to an incompatible class!
(Item.cc, Item_buff.cc, item_timefunc.cc, opt_subselect.cc, sql_acl.cc,
sql_select.cc ...)
- Ensure we do not do integer arithmetic that causes over or underflows.
This includes also ++ and -- of integers.
(Item_func.cc, Item_strfunc.cc, item_timefunc.cc, sql_base.cc ...)
- Added JSON_VALUE_UNITIALIZED to json_value_types and ensure that
value_type is initialized to this instead of to -1, which is not a valid
enum value for json_value_types.
- Ensure we do not call memcpy() when second argument could be null.
- Fixed that Item_func_str::make_empty_result() creates an empty string
instead of a null string (safer as it ensures we do not do arithmetic
on null strings).
Other things:
- Changed struct st_position to an OBJECT and added an initialization
function to it to ensure that we do not copy or use uninitialized
members. The change to a class was also motived that we used "struct
st_position" and POSITION randomly trough the code which was
confusing.
- Notably big rewrite in sql_acl.cc to avoid using deleted objects.
- Changed in sql_partition to use '^' instead of '-'. This is safe as
the operator is either 0 or 0x8000000000000000ULL.
- Added check for select_nr < INT_MAX in JOIN::build_explain() to
avoid bug when get_select() could return NULL.
- Reordered elements in POSITION for better alignment.
- Changed sql_test.cc::print_plan() to use pointers instead of objects.
- Fixed bug in find_set() where could could execute '1 << -1'.
- Added variable have_sanitizer, used by mtr. (This variable was before
only in 10.5 and up). It can now have one of two values:
ASAN or UBSAN.
- Moved ~Archive_share() from ha_archive.cc to ha_archive.h and marked
it virtual. This was an effort to get UBSAN to work with loaded storage
engines. I kept the change as the new place is better.
- Added in CONNECT engine COLBLK::SetName(), to get around a wrong cast
in tabutil.cpp.
- Added HAVE_REPLICATION around usage of rgi_slave, to get embedded
server to compile with UBSAN. (Patch from Marko).
- Added #ifdef for powerpc64 to avoid a bug in old gcc versions related
to integer arithmetic.
Changes that should not be needed but had to be done to suppress warnings
from UBSAN:
- Added static_cast<<uint16_t>> around shift to get rid of a LOT of
compiler warnings when using UBSAN.
- Had to change some '/' of 2 base integers to shift to get rid of
some compile time warnings.
Reviewed by:
- Json changes: Alexey Botchkov
- Charset changes in ctype-uca.c: Alexander Barkov
- InnoDB changes & Embedded server: Marko Mäkelä
- sql_acl.cc changes: Vicențiu Ciorbaru
- build_explain() changes: Sergey Petrunia
Handle "col<>const" in the same way that MDEV-21958 did for
"col NOT IN(const-list)": do not use the condition for range/index_merge
accesses if there is a unique UNIQUE KEY(col).
The testcase is in main/range.test. The rest of test updates are
due to widespread use of 'pk<>1' in the testsuite. Changed the test
to use different but equivalent forms of the conditions.
In the case of a crash directly after a creation of an Aria table,
Aria recovery would think that the table was from another system and
require a repair of the table and inform that the table is 'zerofilled".
This would cause no harm, but was confusing to see when testing atomic
alter table.
Fixed by logging the create transaction id to the log.
Other things:
- Added "show table status from sys" to maria_empy_logs. This ensures one
does not get any zerofill warnings when sys/sys_config is used by other
tests.
- aria_chk --describe now prints a warning if the table was moved from
another system.
- Logging of truncate (maria_delete_all_rows) is changed to use the
current trid for the create table.
This is to ensure that we do not run into the same problem with truncate.
- Changed back sys_config table to Aria as this patch should fix the
"zerofill" problem in buildbot.
- Added scripts/mysql_sys_schema.sql to .gitignore
In MDEV-515, we enabled an optimization where an insert into an
empty table will use table-level locking and undo logging.
This may break applications that expect row-level locking.
The SQL statements created by the mysqldump utility will include the
following:
SET unique_checks=0, foreign_key_checks=0;
We will use these flags to enable the table-level locked and logged
insert. Unless the parameters are set, INSERT will be executed in
the old way, with row-level undo logging and implicit record locks.
Historically, InnoDB supported a buggy page checksum algorithm that did not
compute a checksum over the full page. Later, well before MySQL 4.1
introduced .ibd files and the innodb_file_per_table option, the algorithm
was corrected and the first 4 bytes of each page were redefined to be
a checksum.
The original checksum was so slow that an option to disable page checksum
was introduced for benchmarketing purposes.
The Intel Nehalem microarchitecture introduced the SSE4.2 instruction set
extension, which includes instructions for faster computation of CRC-32C.
In MySQL 5.6 (and MariaDB 10.0), innodb_checksum_algorithm=crc32 was
implemented to make of that. As that option was changed to be the default
in MySQL 5.7, a bug was found on big-endian platforms and some work-around
code was added to weaken that checksum further. MariaDB disables that
work-around by default since MDEV-17958.
Later, SIMD-accelerated CRC-32C has been implemented in MariaDB for POWER
and ARM and also for IA-32/AMD64, making use of carry-less multiplication
where available.
Long story short, innodb_checksum_algorithm=crc32 is faster and more secure
than the pre-MySQL 5.6 checksum, called innodb_checksum_algorithm=innodb.
It should have removed any need to use innodb_checksum_algorithm=none.
The setting innodb_checksum_algorithm=crc32 is the default in
MySQL 5.7 and MariaDB Server 10.2, 10.3, 10.4. In MariaDB 10.5,
MDEV-19534 made innodb_checksum_algorithm=full_crc32 the default.
It is even faster and more secure.
The default settings in MariaDB do allow old data files to be read,
no matter if a worse checksum algorithm had been used.
(Unfortunately, before innodb_checksum_algorithm=full_crc32,
the data files did not identify which checksum algorithm is being used.)
The non-default settings innodb_checksum_algorithm=strict_crc32 or
innodb_checksum_algorithm=strict_full_crc32 would only allow CRC-32C
checksums. The incompatibility with old data files is why they are
not the default.
The newest server not to support innodb_checksum_algorithm=crc32
were MySQL 5.5 and MariaDB 5.5. Both have reached their end of life.
A valid reason for using innodb_checksum_algorithm=innodb could have
been the ability to downgrade. If it is really needed, data files
can be converted with an older version of the innochecksum utility.
Because there is no good reason to allow data files to be written
with insecure checksums, we will reject those option values:
innodb_checksum_algorithm=none
innodb_checksum_algorithm=innodb
innodb_checksum_algorithm=strict_none
innodb_checksum_algorithm=strict_innodb
Furthermore, the following innochecksum options will be removed,
because only strict crc32 will be supported:
innochecksum --strict-check=crc32
innochecksum -C crc32
innochecksum --write=crc32
innochecksum -w crc32
If a user wishes to convert a data file to use a different checksum
(so that it might be used with the no-longer-supported
MySQL 5.5 or MariaDB 5.5, which do not support IMPORT TABLESPACE
nor system tablespace format changes that were made in MariaDB 10.3),
then the innochecksum tool from MariaDB 10.2, 10.3, 10.4, 10.5 or
MySQL 5.7 can be used.
Reviewed by: Thirunarayanan Balathandayuthapani
a. The change makes `mariadb-upgrade` detect if `MYSQL_JSON` data type is needed.
b. Install the data type if it's not installed.
c. Uninstalls the data type once finished.
d. Create `.opt` and `.inc` files `have_type_mysql_json` and adapt the
tests
Reviewed by: vicentiu@mariadb.org
Let us introduce the parameter innodb_read_only_compressed
that is ON by default, making any ROW_FORMAT=COMPRESSED tables
read-only.
I developed the ROW_FORMAT=COMPRESSED format based on
Heikki Tuuri's rough design between 2005 and 2008. It might
have been a good idea back then, but no proper benchmarks were
ever run to validate the design or the implementation.
The format has been more or less obsolete for years.
It limits innodb_page_size to 16384 bytes (the default),
and instant ALTER TABLE is not supported.
This is the first step towards deprecating and removing
write support for ROW_FORMAT=COMPRESSED tables.
MDEV-23855 broke the handling of innodb_flush_sync=OFF.
That parameter is supposed to limit the page write rate
in case the log capacity is being exceeded and log checkpoints
are needed.
With this fix, the following should pass:
./mtr --mysqld=--loose-innodb-flush-sync=0
One of our best regression tests for page flushing is
encryption.innochecksum. With innodb_page_size=16k and
innodb_flush_sync=OFF it would likely hang without this fix.
log_sys.last_checkpoint_lsn: Declare as Atomic_relaxed<lsn_t>
so that we are allowed to read the value while not holding
log_sys.mutex.
buf_flush_wait_flushed(): Let the page cleaner perform the flushing
also if innodb_flush_sync=OFF. After the page cleaner has
completed, perform a checkpoint if it is needed, because
buf_flush_sync_for_checkpoint() will not be run if
innodb_flush_sync=OFF.
buf_flush_ahead(): Simplify the condition. We do not really care
whether buf_flush_page_cleaner() is running.
buf_flush_page_cleaner(): Evaluate innodb_flush_sync at the low
level. If innodb_flush_sync=OFF, rate-limit the batches to
innodb_io_capacity_max pages per second.
Reviewed by: Vladislav Vaintroub
