This bug was seen when parallel replication experienced a deadlock between
transactions T1 and T2, where T2 has reached the commit phase and is waiting
for T1 to commit first. In this case, the deadlock is broken by sending a kill
to T2; that kill error is then later detected and converted to a deadlock
error, which causes T2 to be rolled back and retried.
The problem was that the kill caused ha_commit_trans() to errorneously call
wakeup_subsequent_commits() on T3, signalling it to abort because T2 failed
during commit. This is incorrect, because the error in T2 is only a temporary
error, which will be resolved by normal transaction retry. We should not
signal error to the next transaction until we have executed the code that
handles such temporary errors.
So this patch just removes the calls to wakeup_subsequent_commits() from
ha_commit_trans(). They are incorrect in this case, and they are not needed in
general, as wakeup_subsequent_commits() must in any case be called in
finish_event_group() to wakeup any transactions that may have started to wait
after ha_commit_trans(). And normally, wakeup will in fact have happened
earlier, either from the binlog group commit code, or (in case of no
binlogging) after the fast part of InnoDB/XtraDB group commit.
The symptom of this bug was that replication would break on some transaction
with "Commit failed due to failure of an earlier commit on which this one
depends", but with no such failure of an earlier commit visible anywhere.
The code in binlog group commit around wait_for_commit that controls commit
order, did the wakeup of subsequent commits early, as soon as a following
transaction is put into the group commit queue, but before any such commit has
actually taken place. This causes problems with too early wakeup of
transactions that need to wait for prior to commit, but do not take part in
the binlog group commit for one reason or the other.
This patch solves the problem, by moving the wakeup to happen only after the
binlog group commit is completed.
This requires a new solution to ensure that transactions that arrive later
than the leader are still able to participate in group commit. This patch
introduces a flag wait_for_commit::commit_started. When this is set, a waiter
can queue up itself in the group commit queue.
This way, effectively the wait_for_prior_commit() is skipped only for
transactions that participate in group commit, so that skipping the wait is
safe. Other transactions still wait as needed for correctness.
In SAFE_MUTEX builds, reset the wait_for_commit mutex (destroy and
re-initialise), so that SAFE_MUTEX lock order check does not become
confused when the mutex is re-used for a different purpose.
* split my_var class in three - base my_var and two descencants, move
properties into descendants, remove if(), create a virtual method instead
* factor out the common code in the select_var_ident parser rule
Added MAX_STATEMENT_TIME user variable to automaticly kill queries after a given time limit has expired.
- Added timer functions based on pthread_cond_timedwait
- Added kill_handlerton() to signal storage engines about kill/timeout
- Added support for GRANT ... MAX_STATEMENT_TIME=#
- Copy max_statement_time to current user, if stored in mysql.user
- Added status variable max_statement_time_exceeded
- Added KILL_TIMEOUT
- Removed digest hash from performance schema tests as they change all the time.
- Updated test results that changed because of the new user variables or new fields in mysql.user
This functionallity is inspired by work done by Davi Arnaut at twitter.
Test case is copied from Davi's work.
Documentation can be found at
https://kb.askmonty.org/en/how-to-limittimeout-queries/
mysql-test/r/mysqld--help.result:
Updated for new help message
mysql-test/suite/perfschema/r/all_instances.result:
Added new mutex
mysql-test/suite/sys_vars/r/max_statement_time_basic.result:
Added testing of max_statement_time
mysql-test/suite/sys_vars/t/max_statement_time_basic.test:
Added testing of max_statement_time
mysql-test/t/max_statement_time.test:
Added testing of max_statement_time
mysys/CMakeLists.txt:
Added thr_timer
mysys/my_init.c:
mysys/mysys_priv.h:
Added new mutex and condition variables
Added new mutex and condition variables
mysys/thr_timer.c:
Added timer functions based on pthread_cond_timedwait()
This can be compiled with HAVE_TIMER_CREATE to benchmark agains timer_create()/timer_settime()
sql/lex.h:
Added MAX_STATEMENT_TIME
sql/log_event.cc:
Safety fix (timeout should be threated as an interrupted query)
sql/mysqld.cc:
Added support for timers
Added status variable max_statement_time_exceeded
sql/share/errmsg-utf8.txt:
Added ER_QUERY_TIMEOUT
sql/signal_handler.cc:
Added support for KILL_TIMEOUT
sql/sql_acl.cc:
Added support for GRANT ... MAX_STATEMENT_TIME=#
Copy max_statement_time to current user
sql/sql_class.cc:
Added timer functionality to THD.
Added thd_kill_timeout()
sql/sql_class.h:
Added timer functionality to THD.
Added KILL_TIMEOUT
Added max_statement_time variable in similar manner as long_query_time was done.
sql/sql_connect.cc:
Added handling of max_statement_time_exceeded
sql/sql_parse.cc:
Added starting and stopping timers for queries.
sql/sql_show.cc:
Added max_statement_time_exceeded for user/connects status in MariaDB 10.0
sql/sql_yacc.yy:
Added support for GRANT ... MAX_STATEMENT_TIME=# syntax, to be enabled in 10.0
sql/structs.h:
Added max_statement_time user resource
sql/sys_vars.cc:
Added max_statement_time variables
mysql-test/suite/roles/create_and_drop_role_invalid_user_table.test
Removed test as we require all fields in mysql.user table.
scripts/mysql_system_tables.sql
scripts/mysql_system_tables_data.sql
scripts/mysql_system_tables_fix.sql
Updated mysql.user with new max_statement_time field
The reason for the failure was a bug in an include file on debian that causes 'struct stat'
to have different sized depending on the environment.
This patch fixes so that we always include my_global.h or my_config.h before we include any other files.
Other things:
- Removed #include <my_global.h> in some include files; Better to always do this at the top level to have as few
"always-include-this-file-first' files as possible.
- Removed usage of some include files that where already included by my_global.h or by other files.
client/mysql_plugin.c:
Use my_global.h first
client/mysqlslap.c:
Remove duplicated include files
extra/comp_err.c:
Remove duplicated include files
include/m_string.h:
Remove duplicated include files
include/maria.h:
Remove duplicated include files
libmysqld/emb_qcache.cc:
Use my_global.h first
plugin/semisync/semisync.h:
Use my_pthread.h first
sql/datadict.cc:
Use my_global.h first
sql/debug_sync.cc:
Use my_global.h first
sql/derror.cc:
Use my_global.h first
sql/des_key_file.cc:
Use my_global.h first
sql/discover.cc:
Use my_global.h first
sql/event_data_objects.cc:
Use my_global.h first
sql/event_db_repository.cc:
Use my_global.h first
sql/event_parse_data.cc:
Use my_global.h first
sql/event_queue.cc:
Use my_global.h first
sql/event_scheduler.cc:
Use my_global.h first
sql/events.cc:
Use my_global.h first
sql/field.cc:
Use my_global.h first
Remove duplicated include files
sql/field_conv.cc:
Use my_global.h first
sql/filesort.cc:
Use my_global.h first
Remove duplicated include files
sql/gstream.cc:
Use my_global.h first
sql/ha_ndbcluster.cc:
Use my_global.h first
sql/ha_ndbcluster_binlog.cc:
Use my_global.h first
sql/ha_ndbcluster_cond.cc:
Use my_global.h first
sql/ha_partition.cc:
Use my_global.h first
sql/handler.cc:
Use my_global.h first
sql/hash_filo.cc:
Use my_global.h first
sql/hostname.cc:
Use my_global.h first
sql/init.cc:
Use my_global.h first
sql/item.cc:
Use my_global.h first
sql/item_buff.cc:
Use my_global.h first
sql/item_cmpfunc.cc:
Use my_global.h first
sql/item_create.cc:
Use my_global.h first
sql/item_geofunc.cc:
Use my_global.h first
sql/item_inetfunc.cc:
Use my_global.h first
sql/item_row.cc:
Use my_global.h first
sql/item_strfunc.cc:
Use my_global.h first
sql/item_subselect.cc:
Use my_global.h first
sql/item_sum.cc:
Use my_global.h first
sql/item_timefunc.cc:
Use my_global.h first
sql/item_xmlfunc.cc:
Use my_global.h first
sql/key.cc:
Use my_global.h first
sql/lock.cc:
Use my_global.h first
sql/log.cc:
Use my_global.h first
sql/log_event.cc:
Use my_global.h first
sql/log_event_old.cc:
Use my_global.h first
sql/mf_iocache.cc:
Use my_global.h first
sql/mysql_install_db.cc:
Remove duplicated include files
sql/mysqld.cc:
Remove duplicated include files
sql/net_serv.cc:
Remove duplicated include files
sql/opt_range.cc:
Use my_global.h first
sql/opt_subselect.cc:
Use my_global.h first
sql/opt_sum.cc:
Use my_global.h first
sql/parse_file.cc:
Use my_global.h first
sql/partition_info.cc:
Use my_global.h first
sql/procedure.cc:
Use my_global.h first
sql/protocol.cc:
Use my_global.h first
sql/records.cc:
Use my_global.h first
sql/records.h:
Don't include my_global.h
Better to do this at the upper level
sql/repl_failsafe.cc:
Use my_global.h first
sql/rpl_filter.cc:
Use my_global.h first
sql/rpl_gtid.cc:
Use my_global.h first
sql/rpl_handler.cc:
Use my_global.h first
sql/rpl_injector.cc:
Use my_global.h first
sql/rpl_record.cc:
Use my_global.h first
sql/rpl_record_old.cc:
Use my_global.h first
sql/rpl_reporting.cc:
Use my_global.h first
sql/rpl_rli.cc:
Use my_global.h first
sql/rpl_tblmap.cc:
Use my_global.h first
sql/rpl_utility.cc:
Use my_global.h first
sql/set_var.cc:
Added comment
sql/slave.cc:
Use my_global.h first
sql/sp.cc:
Use my_global.h first
sql/sp_cache.cc:
Use my_global.h first
sql/sp_head.cc:
Use my_global.h first
sql/sp_pcontext.cc:
Use my_global.h first
sql/sp_rcontext.cc:
Use my_global.h first
sql/spatial.cc:
Use my_global.h first
sql/sql_acl.cc:
Use my_global.h first
sql/sql_admin.cc:
Use my_global.h first
sql/sql_analyse.cc:
Use my_global.h first
sql/sql_audit.cc:
Use my_global.h first
sql/sql_base.cc:
Use my_global.h first
sql/sql_binlog.cc:
Use my_global.h first
sql/sql_bootstrap.cc:
Use my_global.h first
Use my_global.h first
sql/sql_cache.cc:
Use my_global.h first
sql/sql_class.cc:
Use my_global.h first
sql/sql_client.cc:
Use my_global.h first
sql/sql_connect.cc:
Use my_global.h first
sql/sql_crypt.cc:
Use my_global.h first
sql/sql_cursor.cc:
Use my_global.h first
sql/sql_db.cc:
Use my_global.h first
sql/sql_delete.cc:
Use my_global.h first
sql/sql_derived.cc:
Use my_global.h first
sql/sql_do.cc:
Use my_global.h first
sql/sql_error.cc:
Use my_global.h first
sql/sql_explain.cc:
Use my_global.h first
sql/sql_expression_cache.cc:
Use my_global.h first
sql/sql_handler.cc:
Use my_global.h first
sql/sql_help.cc:
Use my_global.h first
sql/sql_insert.cc:
Use my_global.h first
sql/sql_lex.cc:
Use my_global.h first
sql/sql_load.cc:
Use my_global.h first
sql/sql_locale.cc:
Use my_global.h first
sql/sql_manager.cc:
Use my_global.h first
sql/sql_parse.cc:
Use my_global.h first
sql/sql_partition.cc:
Use my_global.h first
sql/sql_plugin.cc:
Added comment
sql/sql_prepare.cc:
Use my_global.h first
sql/sql_priv.h:
Added error if we use this before including my_global.h
This check is here becasue so many files includes sql_priv.h first.
sql/sql_profile.cc:
Use my_global.h first
sql/sql_reload.cc:
Use my_global.h first
sql/sql_rename.cc:
Use my_global.h first
sql/sql_repl.cc:
Use my_global.h first
sql/sql_select.cc:
Use my_global.h first
sql/sql_servers.cc:
Use my_global.h first
sql/sql_show.cc:
Added comment
sql/sql_signal.cc:
Use my_global.h first
sql/sql_statistics.cc:
Use my_global.h first
sql/sql_table.cc:
Use my_global.h first
sql/sql_tablespace.cc:
Use my_global.h first
sql/sql_test.cc:
Use my_global.h first
sql/sql_time.cc:
Use my_global.h first
sql/sql_trigger.cc:
Use my_global.h first
sql/sql_udf.cc:
Use my_global.h first
sql/sql_union.cc:
Use my_global.h first
sql/sql_update.cc:
Use my_global.h first
sql/sql_view.cc:
Use my_global.h first
sql/sys_vars.cc:
Added comment
sql/table.cc:
Use my_global.h first
sql/thr_malloc.cc:
Use my_global.h first
sql/transaction.cc:
Use my_global.h first
sql/uniques.cc:
Use my_global.h first
sql/unireg.cc:
Use my_global.h first
sql/unireg.h:
Removed inclusion of my_global.h
storage/archive/ha_archive.cc:
Added comment
storage/blackhole/ha_blackhole.cc:
Use my_global.h first
storage/csv/ha_tina.cc:
Use my_global.h first
storage/csv/transparent_file.cc:
Use my_global.h first
storage/federated/ha_federated.cc:
Use my_global.h first
storage/federatedx/federatedx_io.cc:
Use my_global.h first
storage/federatedx/federatedx_io_mysql.cc:
Use my_global.h first
storage/federatedx/federatedx_io_null.cc:
Use my_global.h first
storage/federatedx/federatedx_txn.cc:
Use my_global.h first
storage/heap/ha_heap.cc:
Use my_global.h first
storage/innobase/handler/handler0alter.cc:
Use my_global.h first
storage/maria/ha_maria.cc:
Use my_global.h first
storage/maria/unittest/ma_maria_log_cleanup.c:
Remove duplicated include files
storage/maria/unittest/test_file.c:
Added comment
storage/myisam/ha_myisam.cc:
Move sql_plugin.h first as this includes my_global.h
storage/myisammrg/ha_myisammrg.cc:
Use my_global.h first
storage/oqgraph/oqgraph_thunk.cc:
Use my_config.h and my_global.h first
One could not include my_global.h before oqgraph_thunk.h (don't know why)
storage/spider/ha_spider.cc:
Use my_global.h first
storage/spider/hs_client/config.cpp:
Use my_global.h first
storage/spider/hs_client/escape.cpp:
Use my_global.h first
storage/spider/hs_client/fatal.cpp:
Use my_global.h first
storage/spider/hs_client/hstcpcli.cpp:
Use my_global.h first
storage/spider/hs_client/socket.cpp:
Use my_global.h first
storage/spider/hs_client/string_util.cpp:
Use my_global.h first
storage/spider/spd_conn.cc:
Use my_global.h first
storage/spider/spd_copy_tables.cc:
Use my_global.h first
storage/spider/spd_db_conn.cc:
Use my_global.h first
storage/spider/spd_db_handlersocket.cc:
Use my_global.h first
storage/spider/spd_db_mysql.cc:
Use my_global.h first
storage/spider/spd_db_oracle.cc:
Use my_global.h first
storage/spider/spd_direct_sql.cc:
Use my_global.h first
storage/spider/spd_i_s.cc:
Use my_global.h first
storage/spider/spd_malloc.cc:
Use my_global.h first
storage/spider/spd_param.cc:
Use my_global.h first
storage/spider/spd_ping_table.cc:
Use my_global.h first
storage/spider/spd_sys_table.cc:
Use my_global.h first
storage/spider/spd_table.cc:
Use my_global.h first
storage/spider/spd_trx.cc:
Use my_global.h first
storage/xtradb/handler/handler0alter.cc:
Use my_global.h first
storage/xtradb/handler/i_s.cc:
Use my_global.h first
We should assume that the store engine will report the first duplicate key for this case.
Old code of suppression of unsafe logging error with LIMIT didn't work, because of wrong usage of my_interval_timer().
Suppress unsafe logging errors to the error log if we get too many unsafe logging errors in a short time.
This is to not overflow the error log with meaningless errors.
- Each error code is suppressed and counted separately.
- We do a 5 minute suppression of new errors if we get more than 10 errors in that time.
Only print unsafe logging errors if log_warnings > 1.
mysql-test/suite/binlog/r/binlog_stm_unsafe_warning.result:
Update test results as INSERT ... ON DUPLICATE KEY UPDATE doesn't get logged anymore
mysql-test/suite/binlog/r/binlog_unsafe.result:
Update test results as INSERT ... ON DUPLICATE KEY UPDATE doesn't get logged anymore
mysql-test/suite/engines/README:
Fixed typos
mysql-test/suite/rpl/r/rpl_known_bugs_detection.result:
Update test results as INSERT ... ON DUPLICATE KEY UPDATE doesn't get logged anymore
sql/sql_base.cc:
Don't log warning if there are two unique keys used with INSERT .. ON DUPLICATE KEY UPDATE.
We should assume that the store engine will report the first duplicate key for this case.
sql/sql_class.cc:
Suppress error in binary log if we get too many unsafe logging errors in a short time.
Only print unsafe logging errors if log_warnings > 1
MDEV-6560 Assertion `! is_set() ' failed in Diagnostics_area::set_ok_status on killing CREATE OR REPLACE
MDEV-6525 Assertion `table->pos_in_locked _tables == __null || table->pos_in_locked_tables->table = table' failed in mark_used_tables_as_free_for_reuse, locking problems and binlogging problems on CREATE OR REPLACE under lock.
mysql-test/r/create_or_replace.result:
Added test for MDEV-6560
mysql-test/t/create_or_replace.test:
Added test for MDEV-6560
mysql-test/valgrind.supp:
Added suppression for OpenSuse 12.3
sql/sql_base.cc:
More DBUG
sql/sql_class.cc:
Changed that thd_sqlcom_can_generate_row_events() does not report that CREATE OR REPLACE is generating row events.
This is safe as this function is only used by InnoDB/XtraDB to check if a query is generating row events as part of another transaction. As CREATE is always run as it's own transaction, this isn't a problem.
This fixed MDEV-6525.
sql/sql_table.cc:
Remember if reopen_tables() generates an error (which can only happen in case of KILL).
This fixed MDEV-6560
Merged lp:maria/maria-10.0-galera up to revision 3880.
Added a new functions to handler API to forcefully abort_transaction,
producing fake_trx_id, get_checkpoint and set_checkpoint for XA. These
were added for future possiblity to add more storage engines that
could use galera replication.
During THD initialization, the value of wsrep_causal_reads (now
being exclusively handled via wsrep_sync_wait, lp:1277053) was
being ignored. Fixed by updating wsrep_sync_wait appropriately.
Merged lp:maria/maria-10.0-galera up to revision 3879.
Added a new functions to handler API to forcefully abort_transaction,
producing fake_trx_id, get_checkpoint and set_checkpoint for XA. These
were added for future possiblity to add more storage engines that
could use galera replication.
bzr merge -r4264 maria/5.5
Text conflict in sql/mysqld.cc
Text conflict in storage/xtradb/btr/btr0cur.c
Text conflict in storage/xtradb/buf/buf0buf.c
Text conflict in storage/xtradb/buf/buf0lru.c
Text conflict in storage/xtradb/handler/ha_innodb.cc
5 conflicts encountered.
~40% bugfixed(*) applied
~40$ bugfixed reverted (incorrect or we're not buggy)
~20% bugfixed applied, despite us being not buggy
(*) only changes in the server code, e.g. not cmakefiles
The bug was that my_real_read() called net_before_header_psi() multiple times for long packets.
Fixed by adding a flag when we are reading a header.
Did also some cleanups to interface of my_net_read() to avoid unnecessary calls if performance schema is not used.
- Added my_net_read_packet() as a replacement for my_net_read(). my_net_read() is still in the client library for old clients.
- Removed THD->m_server_idle (not needed anymore as this is now given as argument to my_net_read_packet()
- Added my_net_read_packet(), which is a new version of my_net_read() with a new parameter if we are doing a read for a new command from the server.
- Added tests for compressed protocol and big packets
include/mysql.h.pp:
Added my_net_read_packet() as a replacement for my_net_read()
include/mysql_com.h:
Added my_net_read_packet() as a replacement for my_net_read()
mysql-test/r/mysql_client_test_comp.result:
New test
mysql-test/t/mysql_client_test-master.opt:
Added max_allowed_packet to be able to test big packets and packet size overflows.
mysql-test/t/mysql_client_test_comp-master.opt:
New test
mysql-test/t/mysql_client_test_nonblock-master.opt:
Added max_allowed_packet to be able to test big packets and packet size overflows.
sql-common/client.c:
Use my_net_read_packet()
sql/mf_iocache.cc:
Use my_net_read_packet()
sql/mysqld.cc:
Removed THD->m_server_idle (not needed anymore as this is now given as argument to my_net_read_packet()
sql/net_serv.cc:
Added argument to my_real_read() to indicte if we are reading the first block of the next statement and should call performance schema.
Added 'compatibilty function' my_net_read().
Added my_net_read_packet(), which is a new version of my_net_read() with a new parameter if we are doing a read for a new command from the server.
sql/sql_class.cc:
Removed m_server_idle (not needed anymore)
sql/sql_class.h:
Removed m_server_idle (not needed anymore)
sql/sql_parse.cc:
Removed m_server_idle (not needed anymore)
tests/mysql_client_test.c:
Added tests for compressed protocol and big packets
After-review changes.
For this patch in 10.0, we do not introduce a new public storage engine API,
we just fix the InnoDB/XtraDB issues. In 10.1, we will make a better public
API that can be used for all storage engines (MDEV-6429).
Eliminate the background thread that did deadlock kills asynchroneously.
Instead, we ensure that the InnoDB/XtraDB code can handle doing the kill from
inside the deadlock detection code (when thd_report_wait_for() needs to kill a
later thread to resolve a deadlock).
(We preserve the part of the original patch that introduces dedicated mutex
and condition for the slave init thread, to remove the abuse of
LOCK_thread_count for start/stop synchronisation of the slave init thread).
The bug was that in some cases, if a replicated transaction was rolled back
due to deadlock, during the subsequent retry of that transaction, the
gtid_slave_pos would _not_ be updated with the new GTID, leaving the GTID
position of the slave incorrect.
Fix this by ensuring during the retry that we clear the flag that marks that
the GTID has already been recorded in gtid_slave_pos, so that the update of
gtid_slave_pos will be done again during the retry.
In the original bug, the symptom was an assertion due to OPTION_GTID_BEGIN not
being cleared during the retry of the transaction. The reason was some code in
handling of a COMMIT query event, which would not clear the flag when not
recording a GTID in gtid_slave_pos. This commit also fixes that code to always
clear the OPTION_GTID_BEGIN flag for clarity, though it is actually not
possible for OPTION_GTID_BEGIN to become set unless a GTID is pending for
update (after fixing the bug described above).
replication causing replication to fail.
Remove the temporary fix for MDEV-5914, which used READ COMMITTED for parallel
replication worker threads. Replace it with a better, more selective solution.
The issue is with certain edge cases of InnoDB gap locks, for example between
INSERT and ranged DELETE. It is possible for the gap lock set by the DELETE to
block the INSERT, if the DELETE runs first, while the record lock set by
INSERT does not block the DELETE, if the INSERT runs first. This can cause a
conflict between the two in parallel replication on the slave even though they
ran without conflicts on the master.
With this patch, InnoDB will ask the server layer about the two involved
transactions before blocking on a gap lock. If the server layer tells InnoDB
that the transactions are already fixed wrt. commit order, as they are in
parallel replication, InnoDB will ignore the gap lock and allow the two
transactions to proceed in parallel, avoiding the conflict.
Improve the fix for MDEV-6020. When InnoDB itself detects a deadlock, it now
asks the server layer for any preferences about which transaction to roll
back. In case of parallel replication with two transactions T1 and T2 fixed to
commit T1 before T2, the server layer will ask InnoDB to roll back T2 as the
deadlock victim, not T1. This helps in some cases to avoid excessive deadlock
rollback, as T2 will in any case need to wait for T1 to complete before it can
itself commit.
Also some misc. fixes found during development and testing:
- Remove thd_rpl_is_parallel(), it is not used or needed.
- Use KILL_CONNECTION instead of KILL_QUERY when a parallel replication
worker thread is killed to resolve a deadlock with fixed commit
ordering. There are some cases, eg. in sql/sql_parse.cc, where a KILL_QUERY
can be ignored if the query otherwise completed successfully, and this
could cause the deadlock kill to be lost, so that the deadlock was not
correctly resolved.
- Fix random test failure due to missing wait_for_binlog_checkpoint.inc.
- Make sure that deadlock or other temporary errors during parallel
replication are not printed to the the error log; there were some places
around the replication code with extra error logging. These conditions can
occur occasionally and are handled automatically without breaking
replication, so they should not pollute the error log.
- Fix handling of rgi->gtid_sub_id. We need to be able to access this also at
the end of a transaction, to be able to detect and resolve deadlocks due to
commit ordering. But this value was also used as a flag to mark whether
record_gtid() had been called, by being set to zero, losing the value. Now,
introduce a separate flag rgi->gtid_pending, so rgi->gtid_sub_id remains
valid for the entire duration of the transaction.
- Fix one place where the code to handle ignored errors called reset_killed()
unconditionally, even if no error was caught that should be ignored. This
could cause loss of a deadlock kill signal, breaking deadlock detection and
resolution.
- Fix a couple of missing mysql_reset_thd_for_next_command(). This could
cause a prior error condition to remain for the next event executed,
causing assertions about errors already being set and possibly giving
incorrect error handling for following event executions.
- Fix code that cleared thd->rgi_slave in the parallel replication worker
threads after each event execution; this caused the deadlock detection and
handling code to not be able to correctly process the associated
transactions as belonging to replication worker threads.
- Remove useless error code in slave_background_kill_request().
- Fix bug where wfc->wakeup_error was not cleared at
wait_for_commit::unregister_wait_for_prior_commit(). This could cause the
error condition to wrongly propagate to a later wait_for_prior_commit(),
causing spurious ER_PRIOR_COMMIT_FAILED errors.
- Do not put the binlog background thread into the processlist. It causes
too many result differences in mtr, but also it probably is not useful
for users to pollute the process list with a system thread that does not
really perform any user-visible tasks...
replication causing replication to fail.
In parallel replication, we run transactions from the master in parallel, but
force them to commit in the same order they did on the master. If we force T1
to commit before T2, but T2 holds eg. a row lock that is needed by T1, we get
a deadlock when T2 waits until T1 has committed.
Usually, we do not run T1 and T2 in parallel if there is a chance that they
can have conflicting locks like this, but there are certain edge cases where
it can occasionally happen (eg. MDEV-5914, MDEV-5941, MDEV-6020). The bug was
that this would cause replication to hang, eventually getting a lock timeout
and causing the slave to stop with error.
With this patch, InnoDB will report back to the upper layer whenever a
transactions T1 is about to do a lock wait on T2. If T1 and T2 are parallel
replication transactions, and T2 needs to commit later than T1, we can thus
detect the deadlock; we then kill T2, setting a flag that causes it to catch
the kill and convert it to a deadlock error; this error will then cause T2 to
roll back and release its locks (so that T1 can commit), and later T2 will be
re-tried and eventually also committed.
The kill happens asynchroneously in a slave background thread; this is
necessary, as the reporting from InnoDB about lock waits happen deep inside
the locking code, at a point where it is not possible to directly call
THD::awake() due to mutexes held.
Deadlock is assumed to be (very) rarely occuring, so this patch tries to
minimise the performance impact on the normal case where no deadlocks occur,
rather than optimise the handling of the occasional deadlock.
Also fix transaction retry due to deadlock when it happens after a transaction
already signalled to later transactions that it started to commit. In this
case we need to undo this signalling (and later redo it when we commit again
during retry), so following transactions will not start too early.
Also add a missing thd->send_kill_message() that got triggered during testing
(this corrects an incorrect fix for MySQL Bug#58933).
- First code, "EXPLAIN FORMAT=JSON stmt" and "ANALYZE FORMAT=JSON stmt"
work for basic queries. Complex constructs (e.g subqueries, etc) not
yet supported.
- No test infrastructure yet
MDEV-406: ANALYZE $stmt
- Ported the old patch to new explain code
- New SQL syntax (ANALYZE $stmt)
- ANALYZE UPDATE/DELETE is now supported (because EXPLAIN UPDATE/DELETE is supported)
- Basic counters are calculated for basic kinds of queries
(still need to see what happens with join buffer, ORDER BY...LIMIT queries, etc)
SHOW PROCESSLIST, SHOW BINLOGS
Problem: A deadlock was occurring when 4 threads were
involved in acquiring locks in the following way
Thread 1: Dump thread ( Slave is reconnecting, so on
Master, a new dump thread is trying kill
zombie dump threads. It acquired thread's
LOCK_thd_data and it is about to acquire
mysys_var->current_mutex ( which LOCK_log)
Thread 2: Application thread is executing show binlogs and
acquired LOCK_log and it is about to acquire
LOCK_index.
Thread 3: Application thread is executing Purge binary logs
and acquired LOCK_index and it is about to
acquire LOCK_thread_count.
Thread 4: Application thread is executing show processlist
and acquired LOCK_thread_count and it is
about to acquire zombie dump thread's
LOCK_thd_data.
Deadlock Cycle:
Thread 1 -> Thread 2 -> Thread 3-> Thread 4 ->Thread 1
The same above deadlock was observed even when thread 4 is
executing 'SELECT * FROM information_schema.processlist' command and
acquired LOCK_thread_count and it is about to acquire zombie
dump thread's LOCK_thd_data.
Analysis:
There are four locks involved in the deadlock. LOCK_log,
LOCK_thread_count, LOCK_index and LOCK_thd_data.
LOCK_log, LOCK_thread_count, LOCK_index are global mutexes
where as LOCK_thd_data is local to a thread.
We can divide these four locks in two groups.
Group 1 consists of LOCK_log and LOCK_index and the order
should be LOCK_log followed by LOCK_index.
Group 2 consists of other two mutexes
LOCK_thread_count, LOCK_thd_data and the order should
be LOCK_thread_count followed by LOCK_thd_data.
Unfortunately, there is no specific predefined lock order defined
to follow in the MySQL system when it comes to locks across these
two groups. In the above problematic example,
there is no problem in the way we are acquiring the locks
if you see each thread individually.
But If you combine all 4 threads, they end up in a deadlock.
Fix:
Since everything seems to be fine in the way threads are taking locks,
In this patch We are changing the duration of the locks in Thread 4
to break the deadlock. i.e., before the patch, Thread 4
('show processlist' command) mysqld_list_processes()
function acquires LOCK_thread_count for the complete duration
of the function and it also acquires/releases
each thread's LOCK_thd_data.
LOCK_thread_count is used to protect addition and
deletion of threads in global threads list. While show
process list is looping through all the existing threads,
it will be a problem if a thread is exited but there is no problem
if a new thread is added to the system. Hence a new mutex is
introduced "LOCK_thd_remove" which will protect deletion
of a thread from global threads list. All threads which are
getting exited should acquire LOCK_thd_remove
followed by LOCK_thread_count. (It should take LOCK_thread_count
also because other places of the code still thinks that exit thread
is protected with LOCK_thread_count. In this fix, we are changing
only 'show process list' query logic )
(Eg: unlink_thd logic will be protected with
LOCK_thd_remove).
Logic of mysqld_list_processes(or file_schema_processlist)
will now be protected with 'LOCK_thd_remove' instead of
'LOCK_thread_count'.
Now the new locking order after this patch is:
LOCK_thd_remove -> LOCK_thd_data -> LOCK_log ->
LOCK_index -> LOCK_thread_count
SHOW PROCESSLIST, SHOW BINLOGS
Problem: A deadlock was occurring when 4 threads were
involved in acquiring locks in the following way
Thread 1: Dump thread ( Slave is reconnecting, so on
Master, a new dump thread is trying kill
zombie dump threads. It acquired thread's
LOCK_thd_data and it is about to acquire
mysys_var->current_mutex ( which LOCK_log)
Thread 2: Application thread is executing show binlogs and
acquired LOCK_log and it is about to acquire
LOCK_index.
Thread 3: Application thread is executing Purge binary logs
and acquired LOCK_index and it is about to
acquire LOCK_thread_count.
Thread 4: Application thread is executing show processlist
and acquired LOCK_thread_count and it is
about to acquire zombie dump thread's
LOCK_thd_data.
Deadlock Cycle:
Thread 1 -> Thread 2 -> Thread 3-> Thread 4 ->Thread 1
The same above deadlock was observed even when thread 4 is
executing 'SELECT * FROM information_schema.processlist' command and
acquired LOCK_thread_count and it is about to acquire zombie
dump thread's LOCK_thd_data.
Analysis:
There are four locks involved in the deadlock. LOCK_log,
LOCK_thread_count, LOCK_index and LOCK_thd_data.
LOCK_log, LOCK_thread_count, LOCK_index are global mutexes
where as LOCK_thd_data is local to a thread.
We can divide these four locks in two groups.
Group 1 consists of LOCK_log and LOCK_index and the order
should be LOCK_log followed by LOCK_index.
Group 2 consists of other two mutexes
LOCK_thread_count, LOCK_thd_data and the order should
be LOCK_thread_count followed by LOCK_thd_data.
Unfortunately, there is no specific predefined lock order defined
to follow in the MySQL system when it comes to locks across these
two groups. In the above problematic example,
there is no problem in the way we are acquiring the locks
if you see each thread individually.
But If you combine all 4 threads, they end up in a deadlock.
Fix:
Since everything seems to be fine in the way threads are taking locks,
In this patch We are changing the duration of the locks in Thread 4
to break the deadlock. i.e., before the patch, Thread 4
('show processlist' command) mysqld_list_processes()
function acquires LOCK_thread_count for the complete duration
of the function and it also acquires/releases
each thread's LOCK_thd_data.
LOCK_thread_count is used to protect addition and
deletion of threads in global threads list. While show
process list is looping through all the existing threads,
it will be a problem if a thread is exited but there is no problem
if a new thread is added to the system. Hence a new mutex is
introduced "LOCK_thd_remove" which will protect deletion
of a thread from global threads list. All threads which are
getting exited should acquire LOCK_thd_remove
followed by LOCK_thread_count. (It should take LOCK_thread_count
also because other places of the code still thinks that exit thread
is protected with LOCK_thread_count. In this fix, we are changing
only 'show process list' query logic )
(Eg: unlink_thd logic will be protected with
LOCK_thd_remove).
Logic of mysqld_list_processes(or file_schema_processlist)
will now be protected with 'LOCK_thd_remove' instead of
'LOCK_thread_count'.
Now the new locking order after this patch is:
LOCK_thd_remove -> LOCK_thd_data -> LOCK_log ->
LOCK_index -> LOCK_thread_count
The fill_schema_table() function used to call get_table_share() for a table name in WHERE
then clear the error list. That way plugins receive the superfluous error notification if it
happens in it. Also the problem was that error handler didn't prevent the suppressed
error message from logging anyway as the logging happens in THD::raise_condition
before the handler call.
Trigger_error_handler is remade into Warnings_only_error_handler, so it stores the error
message in all cases in the thd->stmt_da.
Then later the stored error is raised.
