ISSUE: Incorrect key file. Key file is corrupted,
Reading incorrect key information (keyseg)
from index file. Key definition in .MYI
and .FRM file differs. Starting pointer
to read the keyseg information is changed
to a value greater than the pack_reclength.
Memcpy tries to read keyseg information from
unallocated memory which causes the crash.
SOLUTION: One more check added to compare the
the key definition in .MYI and .FRM
file. If the definition differ, server
produces an error.
primary key with innodb tables
The bug was triggered if a single ALTER TABLE statement both
added and dropped indexes and ALTER TABLE failed during drop
(e.g. because the index was needed in a foreign key constraint).
In such cases, the server index information would get out of
sync with InnoDB - the added index would be present inside
InnoDB, but not in the server. This could then lead to InnoDB
error messages and/or server crashes.
The root cause is that new indexes are added before old indexes
are dropped. This means that if ALTER TABLE fails while dropping
indexes, index changes will be reverted in the server but not
inside InnoDB.
This patch fixes the problem by dropping any added indexes
if drop fails (for ALTER TABLE statements that both adds
and drops indexes).
However, this won't work if we added a primary key as this
key might not be possible to drop inside InnoDB. Therefore,
we resort to the copy algorithm if a primary key is added
by an ALTER TABLE statement that also drops an index.
In 5.6 this bug is more properly fixed by the handler interface
changes done in the scope of WL#5534 "Online ALTER".
ISSUE: Incorrect key file. Key file is corrupted,
Reading incorrect key information (keyseg)
from index file. Key definition in .MYI
and .FRM file differs. Starting pointer
to read the keyseg information is changed
to a value greater than the pack_reclength.
Memcpy tries to read keyseg information from
unallocated memory which causes the crash.
SOLUTION: One more check added to compare the
the key definition in .MYI and .FRM
file. If the definition differ, server
produces an error.
Changes in the InnoDB codebase required to compile and
integrate the MEB codebase with MySQL 5.5.
@ storage/innobase/btr/btr0btr.c
Excluded buffer pool usage from MEB build.
buf_pool_from_bpage calls are in buf0buf.ic, and
the buffer pool functions from that file are
disabled in MEB.
@ storage/innobase/buf/buf0buf.c
Disabling more buffer pool functions unused in MEB.
@ storage/innobase/dict/dict0dict.c
Disabling dict_ind_free that is unused in MEB.
@ storage/innobase/dict/dict0mem.c
The include
#include "ha_prototypes.h"
Was causing conflicts with definitions in my_global.h
Linking C executable mysqlbackup
libinnodb.a(dict0mem.c.o): In function `dict_mem_foreign_table_name_lookup_set':
dict0mem.c:(.text+0x91c): undefined reference to `innobase_get_lower_case_table_names'
libinnodb.a(dict0mem.c.o): In function `dict_mem_referenced_table_name_lookup_set':
dict0mem.c:(.text+0x9fc): undefined reference to `innobase_get_lower_case_table_names'
libinnodb.a(dict0mem.c.o): In function `dict_mem_foreign_table_name_lookup_set':
dict0mem.c:(.text+0x96e): undefined reference to `innobase_casedn_str'
libinnodb.a(dict0mem.c.o): In function `dict_mem_referenced_table_name_lookup_set':
dict0mem.c:(.text+0xa4e): undefined reference to `innobase_casedn_str'
collect2: ld returned 1 exit status
make[2]: *** [mysqlbackup] Error 1
innobase_get_lower_case_table_names
innobase_casedn_str
are functions that are part of ha_innodb.cc that is not part of the build
dict_mem_foreign_table_name_lookup_set
function is not there in the current codebase, meaning we do not use it in MEB.
@ storage/innobase/fil/fil0fil.c
The srv_fast_shutdown variable is declared in
srv0srv.c that is not compiled in the
mysqlbackup codebase.
This throws an undeclared error.
From the Manual
---------------
innodb_fast_shutdown
--------------------
The InnoDB shutdown mode. The default value is 1
as of MySQL 3.23.50, which causes a “fast� shutdown
(the normal type of shutdown). If the value is 0,
InnoDB does a full purge and an insert buffer merge
before a shutdown. These operations can take minutes,
or even hours in extreme cases. If the value is 1,
InnoDB skips these operations at shutdown.
This ideally does not matter from mysqlbackup
@ storage/innobase/ha/ha0ha.c
In file included from /home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/ha/ha0ha.c:34:0:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/btr0sea.h:286:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
make[2]: *** [CMakeFiles/innodb.dir/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/ha/ha0ha.c.o] Error 1
make[1]: *** [CMakeFiles/innodb.dir/all] Error 2
make: *** [all] Error 2
# include "sync0rw.h" is excluded from hotbackup compilation in dict0dict.h
This causes extern rw_lock_t* btr_search_latch_temp; to throw a failure because
the definition of rw_lock_t is not found.
@ storage/innobase/include/buf0buf.h
Excluding buffer pool functions that are unused from the
MEB codebase.
@ storage/innobase/include/buf0buf.ic
replicated the exclusion of
#include "buf0flu.h"
#include "buf0lru.h"
#include "buf0rea.h"
by looking at the current codebase in <meb-trunk>/src/innodb
@ storage/innobase/include/dict0dict.h
dict_table_x_lock_indexes, dict_table_x_unlock_indexes, dict_table_is_corrupted,
dict_index_is_corrupted, buf_block_buf_fix_inc_func are unused in MEB and was
leading to compilation errors and hence excluded.
@ storage/innobase/include/dict0dict.ic
dict_table_x_lock_indexes, dict_table_x_unlock_indexes, dict_table_is_corrupted,
dict_index_is_corrupted, buf_block_buf_fix_inc_func are unused in MEB and was
leading to compilation errors and hence excluded.
@ storage/innobase/include/log0log.h
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/log0log.h: At top level:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/log0log.h:767:2: error: expected specifier-qualifier-list before â⠂¬Ëœmutex_t’
mutex_t definitions were excluded as seen from ambient code
hence excluding definition for log_flush_order_mutex also.
@ storage/innobase/include/os0file.h
Bug in InnoDB code, create_mode should have been create.
@ storage/innobase/include/srv0srv.h
In file included from /home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/buf/buf0buf.c:50:0:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/srv0srv.h: At top level:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/srv0srv.h:120:16: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘srv_use_native_aio’
srv_use_native_aio - we do not use native aio of the OS anyway from MEB. MEB does not compile
InnoDB with this option. Hence disabling it.
@ storage/innobase/include/trx0sys.h
[ 56%] Building C object CMakeFiles/innodb.dir/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c.o
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c: In function ‘trx_sys_read_file_format_id’:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c:1499:20: error: ‘TRX_SYS_FILE_FORMAT_TAG_MAGIC_N’ undeclared (first use in this function)
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c:1499:20: note: each undeclared identifier is reported only once for each function it appears in
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c: At top level:
/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/include/buf0buf.h:607:1: warning: ‘buf_block_buf_fix_inc_func’ declared ‘static’ but never defined
make[2]: *** [CMakeFiles/innodb.dir/home/narayanan/mysql-server/mysql-5.5-meb-rel3.8-innodb-integration-1/storage/innobase/trx/trx0sys.c.o] Error 1
unused calls excluded to enable compilation
@ storage/innobase/mem/mem0dbg.c
excluding #include "ha_prototypes.h" that lead to definitions in ha_innodb.cc
@ storage/innobase/os/os0file.c
InnoDB not compiled with aio support from MEB anyway. Hence excluding this from
the compilation.
@ storage/innobase/page/page0zip.c
page0zip.c:(.text+0x4e9e): undefined reference to `buf_pool_from_block'
collect2: ld returned 1 exit status
buf_pool_from_block defined in buf0buf.ic, most of the file is excluded for compilation of MEB
@ storage/innobase/ut/ut0dbg.c
excluding #include "ha_prototypes.h" since it leads to definitions in ha_innodb.cc
innobase_basename(file) is defined in ha_innodb.cc. Hence excluding that also.
@ storage/innobase/ut/ut0ut.c
cal_tm unused from MEB, was leading to earnings, hence disabling for MEB.
WHEN KILLING
Suppose there is a query waiting for a lock. If the user kills
this query, then "Got error -1 when reading table" error message
must not be logged in the server log file. Since this is a user
requested interruption, no spurious error message must be logged
in the server log. This patch will remove the error message from
the log.
approved by joh and tatjana
Fixed by backport of:
------------------------------------------------------------
revno: 3402.50.156
committer: Jon Olav Hauglid <jon.hauglid@oracle.com>
branch nick: mysql-trunk-test
timestamp: Wed 2012-02-08 14:10:23 +0100
message:
Bug#13417754 ASSERT IN ROW_DROP_DATABASE_FOR_MYSQL DURING DROP SCHEMA
This assert could be triggered if an InnoDB table was being moved
to a different database using ALTER TABLE ... RENAME, while this
database concurrently was being dropped by DROP DATABASE.
The reason for the problem was that no metadata lock was taken
on the target database by ALTER TABLE ... RENAME.
DROP DATABASE was therefore not blocked and could remove
the database while ALTER TABLE ... RENAME was executing. This
could cause the assert in InnoDB to be triggered.
This patch fixes the problem by taking a IX metadata lock on
the target database before ALTER TABLE ... RENAME starts
moving a table to a different database.
Note that this problem did not occur with RENAME TABLE which
already takes the correct metadata locks.
Also note that this patch slightly changes the behavior of
ALTER TABLE ... RENAME. Before, the statement would abort and
return an error if a lock on the target table name could not
be taken immediately. With this patch, ALTER TABLE ... RENAME
will instead block and wait until the lock can be taken
(or until we get a lock timeout). This also means that it is
possible to get ER_LOCK_DEADLOCK errors in this situation
since we allow ALTER TABLE ... RENAME to wait and not just
abort immediately.
WHEN KILLING
Suppose there is a query waiting for a lock. If the user kills
this query, then "Got error -1 when reading table" error message
must not be logged in the server log file. Since this is a user
requested interruption, no spurious error message must be logged
in the server log. This patch will remove the error message from
the log.
approved by joh and tatjana
Details:
- Archive storage engine file access were not instrumented and thus
were not shown in PS tables.
Fix:
- Added instrumentation code by using PS Apis for I/O.
rb://1088
approved by: Marko Makela
This bug was introduced in early stages of plugin. We were not
checking for an implicit lock on sec index rec for trx_id that is
stamped on current version of the clust_index in case where the
clust_index has a previous delete marked version.
The following scenario crashes our mysql server:
1. set global innodb_file_per_table=1;
2. create table t1(c1 int) engine=innodb;
3. alter table t1 discard tablespace;
4. alter table t1 add unique index(c1);
Step 4 crashes the server. This patch introduces a check on discarded
tablespace to avoid the crash.
rb://1041 approved by Marko Makela
FULLTEXT INDEX AND CONCURRENT DML.
Problem Statement:
------------------
1) Create a table with FT index.
2) Enable concurrent inserts.
3) In multiple threads do below operations repeatedly
a) truncate table
b) insert into table ....
c) select ... match .. against .. non-boolean/boolean mode
After some time we could observe two different assert core dumps
Analysis:
--------
1)assert core dump at key_read_cache():
Two select threads operating in-parallel on same key
root block.
1st select thread block->status is set to BLOCK_ERROR
because the my_pread() in read_block() is returning '0'.
Truncate table made the index file size as 1024 and pread
was asked to get the block of count bytes(1024 bytes)
from offset of 1024 which it cannot read since its
"end of file" and retuning '0' setting
"my_errno= HA_ERR_FILE_TOO_SHORT" and the key_file_length,
key_root[0] is same i.e. 1024. Since block status has BLOCK_ERROR
the 1st select thread enter into the free_block() and will
be under wait on conditional mutex by making status as
BLOCK_REASSIGNED and goes for wait_on_readers(). Other select
thread will also work on the same block and sees the status as
BLOCK_ERROR and enters into free_block(), checks for BLOCK_REASSIGNED
and asserting the server.
2)assert core dump at key_write_cache():
One select thread and One insert thread.
Select thread gets the unlocks the 'keycache->cache_lock',
which allows other threads to continue and gets the pread()
return value as'0'(please see the explanation above) and
tries to get the lock on 'keycache->cache_lock' and waits
there for the lock.
Insert thread requests for the block, block will be assigned
from the hash list and makes the page_status as
'PAGE_WAIT_TO_BE_READ' and goes for the read_block(), waits
in the queue since there are some other threads performing
reads on the same block.
Select thread which was waiting for the 'keycache->cache_lock'
mutex in the read_block() will continue after getting the my_pread()
value as '0' and sets the block status as BLOCK_ERROR and goes to
the free_block() and go to the wait_for_readers().
Now the insert thread will awake and continues. and checks
block->status as not BLOCK_READ and it asserts.
Fix:
---
In the full text code, multiple readers of index file is not guarded.
Hence added below below code in _ft2_search() and walk_and_match().
to lock the key_root I have used below code in _ft2_search()
if (info->s->concurrent_insert)
mysql_rwlock_rdlock(&share->key_root_lock[0]);
and to unlock
if (info->s->concurrent_insert)
mysql_rwlock_unlock(&share->key_root_lock[0]);
storage/myisam/ft_boolean_search.c:
Since its a recursion function, to avoid confusion in taking and
releasing the locks, renamed _ft2_search() to _ft2_search_internal()
function. And _ft2_search() will take the lock, call
_ft2_search_internal() and release the lock in case of concurrent
inserts.
storage/myisam/ft_nlq_search.c:
Added read locks code in walk_and_match()
dict_table_replace_index_in_foreign_list(): Replace the dropped index
also in the foreign key constraints of child tables that are
referencing this table.
row_ins_check_foreign_constraint(): If the underlying index is
missing, refuse the operation.
rb:1051 approved by Jimmy Yang
The following scenario crashes our mysql server:
1. set global innodb_file_per_table=1;
2. create table t1(c1 int) engine=innodb;
3. alter table t1 discard tablespace;
4. alter table t1 add unique index(c1);
Step 4 crashes the server. This patch introduces a check on discarded
tablespace to avoid the crash.
rb://1041 approved by Marko Makela
FULLTEXT INDEX AND CONCURRENT DML.
Problem Statement:
------------------
1) Create a table with FT index.
2) Enable concurrent inserts.
3) In multiple threads do below operations repeatedly
a) truncate table
b) insert into table ....
c) select ... match .. against .. non-boolean/boolean mode
After some time we could observe two different assert core dumps
Analysis:
--------
1)assert core dump at key_read_cache():
Two select threads operating in-parallel on same key
root block.
1st select thread block->status is set to BLOCK_ERROR
because the my_pread() in read_block() is returning '0'.
Truncate table made the index file size as 1024 and pread
was asked to get the block of count bytes(1024 bytes)
from offset of 1024 which it cannot read since its
"end of file" and retuning '0' setting
"my_errno= HA_ERR_FILE_TOO_SHORT" and the key_file_length,
key_root[0] is same i.e. 1024. Since block status has BLOCK_ERROR
the 1st select thread enter into the free_block() and will
be under wait on conditional mutex by making status as
BLOCK_REASSIGNED and goes for wait_on_readers(). Other select
thread will also work on the same block and sees the status as
BLOCK_ERROR and enters into free_block(), checks for BLOCK_REASSIGNED
and asserting the server.
2)assert core dump at key_write_cache():
One select thread and One insert thread.
Select thread gets the unlocks the 'keycache->cache_lock',
which allows other threads to continue and gets the pread()
return value as'0'(please see the explanation above) and
tries to get the lock on 'keycache->cache_lock' and waits
there for the lock.
Insert thread requests for the block, block will be assigned
from the hash list and makes the page_status as
'PAGE_WAIT_TO_BE_READ' and goes for the read_block(), waits
in the queue since there are some other threads performing
reads on the same block.
Select thread which was waiting for the 'keycache->cache_lock'
mutex in the read_block() will continue after getting the my_pread()
value as '0' and sets the block status as BLOCK_ERROR and goes to
the free_block() and go to the wait_for_readers().
Now the insert thread will awake and continues. and checks
block->status as not BLOCK_READ and it asserts.
Fix:
---
In the full text code, multiple readers of index file is not guarded.
Hence added below below code in _ft2_search() and walk_and_match().
to lock the key_root I have used below code in _ft2_search()
if (info->s->concurrent_insert)
mysql_rwlock_rdlock(&share->key_root_lock[0]);
and to unlock
if (info->s->concurrent_insert)
mysql_rwlock_unlock(&share->key_root_lock[0]);
storage/myisam/ft_boolean_search.c:
Since its a recursion function, to avoid confusion in taking and
releasing the locks, renamed _ft2_search() to _ft2_search_internal()
function. And _ft2_search() will take the lock, call
_ft2_search_internal() and release the lock in case of concurrent
inserts.
storage/myisam/ft_nlq_search.c:
Added read locks code in walk_and_match()
BY A CONCURRENT TRANSACTIO
The member function QUICK_RANGE_SELECT::init_ror_merged_scan() performs
a table handler clone. Innodb does not provide a clone operation.
The ha_innobase::clone() is not there. The handler::clone() does not
take care of the ha_innobase->prebuilt->select_lock_type. Because of
this what happens is that for one index we do a locking read, and
for the other index we were doing a non-locking (consistent) read.
The patch introduces ha_innobase::clone() member function.
It is implemented similar to ha_myisam::clone(). It calls the
base class handler::clone() and then does any additional operation
required. I am setting the ha_innobase->prebuilt->select_lock_type
correctly.
rb://1060 approved by Marko
rb://1043
approved by: Sunny Bains
Two internal counters were incremented twice for a single
operations. The counters are:
srv_buf_pool_flushed
buf_lru_flush_page_count
TABLES IN INCORRECT ENGINE
PROBLEM:
CREATE/ALTER TABLE currently can move system tables like
mysql.db, user, host etc, to engines other than MyISAM. This is not
completely supported as of now, by mysqld. When some of system tables
like plugin, servers, event, func, *_priv, time_zone* are moved
to innodb, mysqld restart crashes. Currently system tables
can be moved to BLACKHOLE also!!!.
ANALYSIS:
The problem is that there is no check before creating or moving
a system table to some particular engine.
System tables are suppose to be residing in MyISAM. We can think
of restricting system tables to exist only in MyISAM. But, there could
be future needs of these system tables to be part of other engines
by design. For eg, NDB cluster expects some tables to be on innodb
or ndb engine. This calls for a solution, by which system
tables can be supported by any desired engine, with minimal effort.
FIX:
The solution provides a handlerton interface using which,
mysqld server can query particular storage engine handlerton for
system tables that it supports. This way each storage engine
layer can define their own system database and system tables.
The check_engine() function uses the new handlerton function
ha_check_if_supported_system_table() to check if db.tablename
provided in the DDL is supported by the SE.
Note: This fix has modified a test in help.test, which was moving
mysql.help_* to innodb. The primary intention of the test was not
to move them between engines.
Bug#13639204 64111: CRASH ON SELECT SUBQUERY WITH NON UNIQUE INDEX
The crash happened due to wrong calculation
of key length during creation of reference for
sort order index. The problem is that
keyuse->used_tables can have OUTER_REF_TABLE_BIT enabled
but used_tables parameter(create_ref_for_key() func) does
not have it. So key parts which have OUTER_REF_TABLE_BIT
are ommited and it could lead to incorrect key length
calculation(zero key length).
mysql-test/r/subselect_innodb.result:
test result
mysql-test/t/subselect_innodb.test:
test case
sql/sql_select.cc:
added OUTER_REF_TABLE_BIT to the used_tables parameter
for create_ref_for_key() function.
storage/innobase/handler/ha_innodb.cc:
added assertion, request from Inno team
storage/innodb_plugin/handler/ha_innodb.cc:
added assertion, request from Inno team
Fix the calculation of the next autoinc value when offset > 1. Some of the
results have changed due to the changes in the allocation calculation. The
new calculation will result in slightly bigger gaps for bulk inserts.
rb://866 Approved by Jimmy Yang.
Backported from mysql-trunk (5.6)
LOCK_THREAD_COUNT
When using the performance schema file io instrumentation in MySQL 5.5,
a thread would loop forever inside lf_pinbox_put_pins, when disconnecting.
It would also hold LOCK_thread_count while doing so, effectively killing the
server.
The root cause of the loop in lf_pinbox_put_pins() is a leak of LF_PINS,
when used with the filename_hash LF_HASH table in the performance schema.
This fix contains the following changes:
1)
Added the missing call to lf_hash_search_unpin(), to prevent the leak.
2)
In mysys/lf_alloc-pin.c, there was some extra debugging code
(MY_LF_EXTRA_DEBUG) written to detect precisely this kind of issues,
but it was never used.
Replaced MY_LF_EXTRA_DEBUG with DBUG_OFF, so that leaks similar to this one
can be always detected in regular debug builds.
3)
Backported the fix for the following bug, from 5.6 to 5.5:
Bug#13417446 - 63339: INCORRECT FILE PATH IN PEFORMANCE_SCHEMA ON WINDOWS
HANG IN PREPARING WITH 100% CPU USAGE
Infinite loop in the subselect_indexsubquery_engine::exec()
function caused Server hang with 100% CPU usage.
The BLACKHOLE storage engine didn't update handler's
table->status variable after index operations, that
caused an infinite "while(!table->status)" execution.
Index access methods of the BLACKHOLE engine handler
have been updated to set table->status variable to
STATUS_NOT_FOUND or 0 when such a method returns a
HA_ERR_END_OF_FILE error or 0 respectively.
mysql-test/r/blackhole.result:
Bug #11880012: INDEX_SUBQUERY, BLACKHOLE,
HANG IN PREPARING WITH 100% CPU USAGE
New test file for the BLACKHOLE engine.
mysql-test/t/blackhole.test:
Bug #11880012: INDEX_SUBQUERY, BLACKHOLE,
HANG IN PREPARING WITH 100% CPU USAGE
New test file for the BLACKHOLE engine.
storage/blackhole/ha_blackhole.cc:
Bug #11880012: INDEX_SUBQUERY, BLACKHOLE,
HANG IN PREPARING WITH 100% CPU USAGE
Index access methods of the BLACKHOLE engine handler
have been updated to set table->status variable to
STATUS_NOT_FOUND or 0 when such a method returns a
HA_ERR_END_OF_FILE error or 0 respectively, like
we do in MyISAM storage engine.
rb://942
approved by: Marko Makela
We don't need to scan LRU for dropping AHI entries when DROPing a table.
AHI entries are already removed when we free up extents for the btree.