Renamed storage/innodb_plugin to storage/innobase, so that 1) it's the same

layout as we always had in trees containing only the builtin
2) win\configure.js WITH_INNOBASE_STORAGE_ENGINE still works.

storage/innobase/CMakeLists.txt:
  fix to new directory name (and like 5.1)
storage/innobase/Makefile.am:
  fix to new directory name (and like 5.1)
storage/innobase/handler/ha_innodb.cc:
  fix to new directory name (and like 5.1)
storage/innobase/plug.in:
  fix to new directory name (and like 5.1)

storage/innobase/CMakeLists.txt

@@ -0,0 +1,78 @@
+# Copyright (C) 2009 Oracle/Innobase Oy
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; version 2 of the License.
+# 
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+# 
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+
+# This is the CMakeLists for InnoDB Plugin
+
+
+SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -DSAFEMALLOC -DSAFE_MUTEX")
+SET(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -DSAFEMALLOC -DSAFE_MUTEX")
+INCLUDE("${PROJECT_SOURCE_DIR}/storage/mysql_storage_engine.cmake")
+IF (CMAKE_SIZEOF_VOID_P MATCHES 8)
+	SET(WIN64 TRUE)
+ENDIF (CMAKE_SIZEOF_VOID_P MATCHES 8)
+
+# Include directories under innobase
+INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/storage/innobase/include
+		    ${CMAKE_SOURCE_DIR}/storage/innobase/handler)
+
+# Include directories under mysql
+INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/include
+		    ${CMAKE_SOURCE_DIR}/sql
+		    ${CMAKE_SOURCE_DIR}/regex
+		    ${CMAKE_SOURCE_DIR}/zlib
+		    ${CMAKE_SOURCE_DIR}/extra/yassl/include)
+
+# Removing compiler optimizations for innodb/mem/* files on 64-bit Windows
+# due to 64-bit compiler error, See MySQL Bug #19424, #36366, #34297
+IF(MSVC AND $(WIN64))
+	SET_SOURCE_FILES_PROPERTIES(mem/mem0mem.c mem/mem0pool.c
+				    PROPERTIES COMPILE_FLAGS -Od)
+ENDIF(MSVC AND $(WIN64))
+
+SET(INNOBASE_SOURCES	btr/btr0btr.c btr/btr0cur.c btr/btr0pcur.c btr/btr0sea.c
+			buf/buf0buddy.c buf/buf0buf.c buf/buf0flu.c buf/buf0lru.c buf/buf0rea.c
+			data/data0data.c data/data0type.c
+			dict/dict0boot.c dict/dict0crea.c dict/dict0dict.c dict/dict0load.c dict/dict0mem.c
+			dyn/dyn0dyn.c
+			eval/eval0eval.c eval/eval0proc.c
+			fil/fil0fil.c
+			fsp/fsp0fsp.c
+			fut/fut0fut.c fut/fut0lst.c
+			ha/ha0ha.c ha/hash0hash.c ha/ha0storage.c
+			ibuf/ibuf0ibuf.c
+			pars/lexyy.c pars/pars0grm.c pars/pars0opt.c pars/pars0pars.c pars/pars0sym.c
+			lock/lock0lock.c lock/lock0iter.c
+			log/log0log.c log/log0recv.c
+			mach/mach0data.c
+			mem/mem0mem.c mem/mem0pool.c
+			mtr/mtr0log.c mtr/mtr0mtr.c
+			os/os0file.c os/os0proc.c os/os0sync.c os/os0thread.c
+			page/page0cur.c page/page0page.c page/page0zip.c
+			que/que0que.c
+			handler/ha_innodb.cc handler/handler0alter.cc handler/i_s.cc handler/mysql_addons.cc
+			read/read0read.c
+			rem/rem0cmp.c rem/rem0rec.c
+			row/row0ext.c row/row0ins.c row/row0merge.c row/row0mysql.c row/row0purge.c row/row0row.c
+			row/row0sel.c row/row0uins.c row/row0umod.c row/row0undo.c row/row0upd.c row/row0vers.c
+			srv/srv0que.c srv/srv0srv.c srv/srv0start.c
+			sync/sync0arr.c sync/sync0rw.c sync/sync0sync.c
+			thr/thr0loc.c
+			trx/trx0i_s.c trx/trx0purge.c trx/trx0rec.c trx/trx0roll.c trx/trx0rseg.c
+			trx/trx0sys.c trx/trx0trx.c trx/trx0undo.c
+			usr/usr0sess.c
+			ut/ut0byte.c ut/ut0dbg.c ut/ut0mem.c ut/ut0rnd.c ut/ut0ut.c ut/ut0vec.c
+			ut/ut0list.c ut/ut0wqueue.c)
+ADD_DEFINITIONS(-DHAVE_WINDOWS_ATOMICS -DINNODB_RW_LOCKS_USE_ATOMICS -DIB_HAVE_PAUSE_INSTRUCTION)
+MYSQL_STORAGE_ENGINE(INNOBASE)